miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 139 bits (70), Expect = 8e-33
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 6 actggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnntcttca 65
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 91 actggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaatcttca 32
Query: 66 ggaaaagatcgatgaaccgctgcctccagtg 96
|||||||||||||||||||||||||||||||
Sbjct: 31 ggaaaagatcgatgaaccgctgcctccagtg 1
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnntcttcag 66
|||||||||||||||||||||||||||| |||| |||||| |||| | |||
Sbjct: 90 ctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaattggccag 31
Query: 67 gaaaagatcgatgaaccgctgcctccagtg 96
||| ||||||||||||||||||||||||||
Sbjct: 30 gaagagatcgatgaaccgctgcctccagtg 1
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 caggaaaagatcgatgaaccgctgcctccagtg 96
|||||| ||||||||||||||||||||||||||
Sbjct: 33 caggaagagatcgatgaaccgctgcctccagtg 1
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcggttcgtgtt 39
|||||||||||||||||||||||| ||| ||||
Sbjct: 90 ctggatgcagaggtttatcgatcgattcatgtt 58
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 caggaaaagatcgatgaaccgctgcctccagtg 96
|||||| ||||||||||||||||||||||||||
Sbjct: 33 caggaagagatcgatgaaccgctgcctccagtg 1
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 95 ctggatgcagaggtttatcgatcg 72
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 64 caggaaaagatcgatgaaccgctgcctccag 94
|||||| ||||||||||||||||||||||||
Sbjct: 33 caggaagagatcgatgaaccgctgcctccag 3
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatc 29
|||||||||||||||||||||||
Sbjct: 87 ctggatgcagaggtttatcgatc 65
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 62 ttcaggaaaagatcgatgaaccgctgcctccagtg 96
|||||||| |||||||||||||||||| |||||||
Sbjct: 35 ttcaggaacagatcgatgaaccgctgcatccagtg 1
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 62 ttcaggaaaagatcgatgaaccgctgcctccagtg 96
|||||||| |||||||||||||||||| |||||||
Sbjct: 35 ttcaggaagagatcgatgaaccgctgcatccagtg 1
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 actggatgcagaggtttatcgatcg 30
|||||||||||||||||||||||||
Sbjct: 158 actggatgcagaggtttatcgatcg 134
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 actggatgcagaggtttatcgatcg 30
|||||||||||||||||||||||||
Sbjct: 159 actggatgcagaggtttatcgatcg 135
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 90 ctggatgcagaggtttatcgatcg 67
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 72 gatcgatgaaccgctgcctccag 94
|||||||||||||||||||||||
Sbjct: 25 gatcgatgaaccgctgcctccag 3
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 131 ctggatgcagaggtttatcgatcg 108
