miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01009083.1/25466-25273 3694:Populus trichocarpa
Length = 194
Score = 289 bits (146), Expect = 7e-78
Identities = 180/190 (94%), Gaps = 1/190 (0%)
Strand = Plus / Plus
Query: 3 aggggctgaggtgctccttttagtccaatacggagggctgagaagcggctagagctgcca 62
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3 aggggctaaagtgctccttttagtccaataaggagggctgagaagcggctagagctgcca 62
Query: 63 tctcatgcatttaggcaatgcttaacatttgacgaagagaggttaagcttggccacttgc 122
||||||||||||||||||||||||||||||| | ||||| | ||||||||||||| |||
Sbjct: 63 tctcatgcatttaggcaatgcttaacatttggcaaagag-gtttaagcttggccaggtgc 121
Query: 123 atggtgtgggagcaactccttccgcatgctttgctcgcccattggactgaagggagctcc 182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 122 atggtgtgggagcaactccttccgcatgctttgttcgcccattggactgaagggagctcc 181
Query: 183 tggttttacc 192
||||||||||
Sbjct: 182 tggttttacc 191
>RF00638;MIR159;ABIM01001714.1/11958-11721 3649:Carica papaya
(papaya)
Length = 238
Score = 105 bits (53), Expect = 2e-22
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 120 tgcatggtgtgggagcaactccttccgcatgctttgctcgcccattggactgaagggagc 179
||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 163 tgcatggagtgggagcaactccttccccatactttgcccgcccattggactgaagggagc 222
Query: 180 tcctggttt 188
|||||||||
Sbjct: 223 tcctggttt 231
Score = 77.8 bits (39), Expect = 5e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 2 gaggggctgaggtgctccttttagtccaatacggagggctgagaagcggctagagctgcc 61
|||| ||||||| |||||||| || |||||||||||| |||||| | || ||||||||||
Sbjct: 2 gaggagctgaggagctcctttcagcccaatacggaggactgagatgtgggtagagctgcc 61
Query: 62 atctcatgcat 72
|||||||||||
Sbjct: 62 atctcatgcat 72
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 79.8 bits (40), Expect = 1e-14
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 15 gctccttttagtccaatacggagggctgagaagcggcta-gagctgccatctcatgcatt 73
|||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 15 gctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgcatt 74
Query: 74 taggcaat 81
|||||||
Sbjct: 75 aaggcaat 82
>RF00638;MIR159;EU526570.1/508-238 49390:Coffea canephora
Length = 271
Score = 77.8 bits (39), Expect = 5e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 120 tgcatggtgtgggagcaactccttccgcatgctttgctcgcccattggactgaagggagc 179
||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 196 tgcatggtgtgggagcaactcctgtcgctcactttgcccgcccattggactgaagggagc 255
Query: 180 tcc 182
|||
Sbjct: 256 tcc 258
Score = 65.9 bits (33), Expect = 2e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 25 gtccaatacggagggctgagaagcggctagagctgccatctcatgcatt 73
|||||| || |||||||| | ||||||||||||||||||||||||||||
Sbjct: 25 gtccaagaccgagggctggggagcggctagagctgccatctcatgcatt 73
>RF00638;MIR159;AM434575.1/6317-6094 29760:Vitis vinifera
Length = 224
Score = 73.8 bits (37), Expect = 8e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 15 gctccttttagtccaatacggagggctgagaagcggctagagctgccatctcatgca 71
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 15 gctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgca 71
Score = 60.0 bits (30), Expect = 1e-08
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 129 tgggagcaactccttccgcatgctttgctcgcccattggactgaagggagctcc 182
|||||||||||||| ||||| ||||||| | | |||||||||||||||||||||
Sbjct: 159 tgggagcaactcct-ccgcacgctttgcccactcattggactgaagggagctcc 211
>RF00638;MIR159;BABK01007609.1/868-644 34305:Lotus japonicus
Length = 225
Score = 63.9 bits (32), Expect = 8e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 10 gaggtgctccttttagtccaatacggagggctgagaagcggctagagctgccatctcatg 69
|||| |||||||| | ||||||||| ||||||||| || ||| ||||||| |||||||||
Sbjct: 10 gaggagctcctttcaatccaatacgaagggctgaggagaggcaagagctgtcatctcatg 69
Query: 70 catt 73
||||
Sbjct: 70 catt 73
Score = 48.1 bits (24), Expect = 5e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 111 ttggccacttgcatggtgtgggagcaactccttccgcatgctttgctcgcccattggact 170
||||||| ||||||| |||||||||||||| |||| ||||| || | |||||||| |
Sbjct: 142 ttggccaggtgcatggcgtgggagcaactcc-accgcctgcttagcccagccattggatt 200
Query: 171 gaagggagctcc 182
||||||||||||
Sbjct: 201 gaagggagctcc 212
