miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaattggcca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaattggcca 32
Query: 67 ggaagagatcgatgaaccgctgcctccagtg 97
|||||||||||||||||||||||||||||||
Sbjct: 31 ggaagagatcgatgaaccgctgcctccagtg 1
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaattggccag 67
|||||||||||||||||||||||||||| |||| |||||| |||||||||| | |||
Sbjct: 90 ctggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaatcttcag 31
Query: 68 gaagagatcgatgaaccgctgcctccagtg 97
||| ||||||||||||||||||||||||||
Sbjct: 30 gaaaagatcgatgaaccgctgcctccagtg 1
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 64 ccaggaagagatcgatgaaccgctgcctccagtg 97
||||||||||||||||||||||||||||||||||
Sbjct: 34 ccaggaagagatcgatgaaccgctgcctccagtg 1
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 64 ccaggaagagatcgatgaaccgctgcctccagtg 97
||||||||||||||||||||||||||||||||||
Sbjct: 34 ccaggaagagatcgatgaaccgctgcctccagtg 1
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 caggaagagatcgatgaaccgctgcctccag 95
|||||||||||||||||||||||||||||||
Sbjct: 33 caggaagagatcgatgaaccgctgcctccag 3
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcgatcggttcatgttttt 43
|||||||||||||||||||||||| |||||| ||||
Sbjct: 88 gctggatgcagaggtttatcgatctattcatgctttt 52
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 65 caggaagagatcgatgaaccgctgcctccagtg 97
||||||||||||||||||||||||| |||||||
Sbjct: 33 caggaagagatcgatgaaccgctgcatccagtg 1
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcga 28
||||||||||||||||||||||
Sbjct: 88 gctggatgcagaggtttatcga 67
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 56.0 bits (28), Expect = 9e-08
Identities = 78/93 (83%), Gaps = 5/93 (5%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaa--aaaattggc 64
|||||||||||||||||||||| || ||||||||| | | | | |||| ||||||
Sbjct: 90 gctggatgcagaggtttatcgaccgattcatgtttgttttacgagacaaacaaaatt--- 34
Query: 65 caggaagagatcgatgaaccgctgcctccagtg 97
|||||| |||||||||||||||||| |||||||
Sbjct: 33 caggaacagatcgatgaaccgctgcatccagtg 1
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcgatcggttcatgttttt 43
|||||||||| ||||||||||||| ||||||| ||||
Sbjct: 92 gctggatgcacaggtttatcgatctgttcatgctttt 56
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 aagagatcgatgaaccgctgcctccag 95
||||||||||| |||||||||||||||
Sbjct: 29 aagagatcgatcaaccgctgcctccag 3
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcgatcg 31
|||||||||||||||||||||||||
Sbjct: 91 gctggatgcagaggtttatcgatcg 67
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 gatcgatgaaccgctgcctccag 95
|||||||||||||||||||||||
Sbjct: 25 gatcgatgaaccgctgcctccag 3
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcgatcg 31
|||||||||||||||||||||||||
Sbjct: 132 gctggatgcagaggtttatcgatcg 108
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcg 31
||||||||||||||||||||||||
Sbjct: 157 ctggatgcagaggtttatcgatcg 134
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcg 31
||||||||||||||||||||||||
Sbjct: 158 ctggatgcagaggtttatcgatcg 135
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 gctggatgcagaggtttatcga 28
||||||||||||||||||||||
Sbjct: 133 gctggatgcagaggtttatcga 112
