miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01021309.1/1506-1605 3694:Populus trichocarpa
Length = 100
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 13 gacccaacgctattggatttggttgggcattgggtttggctggacagctggacccaatag 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gacccaacgctattggatttggttgggcattgggtttggctggacagctggacccaatag 41
Query: 73 cgttgagtctggcagccgagc 93
|||||||||||||||||||||
Sbjct: 40 cgttgagtctggcagccgagc 20
>RF00779;MIR474;AARH01009074.1/28834-28883 3694:Populus
trichocarpa
Length = 50
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gtagccggacccaacgctattggatt 31
||||||||||||||||||||||||||
Sbjct: 25 gtagccggacccaacgctattggatt 50
>RF00779;MIR474;AARH01000632.1/59453-59385 3694:Populus
trichocarpa
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 64 acccaatagcgttgagtctggcagccgagc 93
|||||||||| |||||||||||||||||||
Sbjct: 43 acccaatagcattgagtctggcagccgagc 14
>RF00779;MIR474;AARH01007385.1/279801-279862 3694:Populus
trichocarpa
Length = 62
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 38 ggcattgggtttggctggacagctggacccaatagcgttgagtct 82
|||||||||| | |||| |||||||| |||||||||||||||||
Sbjct: 55 ggcattgggtcttgctgcccagctggatccaatagcgttgagtct 11
>RF00779;MIR474;AARH01000632.1/60116-60165 3694:Populus
trichocarpa
Length = 50
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 41 attgggtttggctggacagctggacccaatagc 73
||||||| | |||||||||||||||||||||||
Sbjct: 39 attgggtctagctggacagctggacccaatagc 7
>RF00779;MIR474;AARH01000632.1/60196-60114 3694:Populus
trichocarpa
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 41 attgggtttggctggacagctggacccaatagc 73
||||||| | |||||||||||||||||||||||
Sbjct: 43 attgggtctagctggacagctggacccaatagc 75
>RF00779;MIR474;AARH01008489.1/8703-8614 3694:Populus trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 ggtttggctggacagctggacccaata 71
||||||||||| |||||||||||||||
Sbjct: 1 ggtttggctgggcagctggacccaata 27
>RF00779;MIR474;AARH01000558.1/23643-23576 3694:Populus
trichocarpa
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 41 attgggtttggctggacagctggacccaata 71
||||||| ||||||| |||||||||||||||
Sbjct: 66 attgggtgtggctgggcagctggacccaata 36
>RF00779;MIR474;AARH01003913.1/128002-128091 3694:Populus
trichocarpa
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttgggtttggctggacagctggacccaata 71
|||||| ||||||| |||||||||||||||
Sbjct: 12 ttgggtctggctgggcagctggacccaata 41
