miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 218 bits (110), Expect = 1e-56
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 57
Query: 61 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 7
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
|||||||||||||||||||||||||
Sbjct: 88 attgccgggcaaatctcctttggca 64
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
|||||||||||||||||||||||||
Sbjct: 103 attgccgggcaaatctcctttggca 79
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
|||||||||||||||||||||||||
Sbjct: 110 attgccgggcaaatctcctttggca 86
>RF00445;mir-399;AASG02001979.1/23540-23433 3988:Ricinus communis
(castor bean)
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 4 gccgggcaaatctcctttggcatg 27
||||||||||||||||||||||||
Sbjct: 99 gccgggcaaatctcctttggcatg 76
>RF00445;mir-399;AARH01004856.1/144755-144865 3694:Populus
trichocarpa
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggcat 26
|||||||||||||||| |||||||||
Sbjct: 105 attgccgggcaaatcttctttggcat 80
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 74 ttagtggctgcatgccaatggaag-cttgccctgtaat 110
||||||||||| |||||||||| | |||||||||||||
Sbjct: 44 ttagtggctgcctgccaatggaggtcttgccctgtaat 7
