miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01005063.1/71887-71770 3694:Populus trichocarpa
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 caaacccaaa-gctattgggtatggtggtggagccaaactcaaatgcaattaggtcttgc 60
|||||||||| |||||||||| |||| | |||||| ||| ||| || |||||||||||
Sbjct: 30 caaacccaaatgctattgggtctggttgcggagcctaacccaatcgctattaggtcttgt 89
Query: 61 tgtggagccaga 72
||||||| ||||
Sbjct: 90 tgtggagtcaga 101
>RF00779;MIR474;AARH01007997.1/197004-197141 3694:Populus
trichocarpa
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 41 caaatgcaattaggtcttgctgtggagccagaccccatatcctt 84
||||||| ||| |||||||| | |||||||||||| ||||||||
Sbjct: 2 caaatgctattgggtcttgccgcggagccagacccaatatcctt 45
>RF00779;MIR474;AARH01001850.1/103516-103618 3694:Populus
trichocarpa
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 41 caaatgcaattaggtcttgctgtggagccagaccccatatccttcagtctggtgggcaag 100
||||||| ||| | ||| |||| |||||||||||| |||||||| || ||| |||||||
Sbjct: 2 caaatgctattggatctggctgcggagccagacccaatatccttgggtttggagggcaag 61
Query: 101 gcaatt 106
|||||
Sbjct: 62 acaatt 67
>RF00779;MIR474;AARH01000156.1/133887-133786 3694:Populus
trichocarpa
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 gtctggtgggcaaggcaattgagtct 112
||||| ||||||||||||||||||||
Sbjct: 45 gtctgatgggcaaggcaattgagtct 70
