miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01029;mir-649;DQ427109.1/18963-19077 9606:Homo sapiens (human)
Length = 115
Score = 63.9 bits (32), Expect = 8e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 158 gcacagttcaaacctatgttgttcaagggtca 189
||||||||||||||||||||||||||||||||
Sbjct: 70 gcacagttcaaacctatgttgttcaagggtca 101
>RF01029;mir-649;ABDC01335479.1/1940-1829 30608:Microcebus murinus
(gray mouse lemur)
Length = 112
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 159 cacagttcaaacctatgttgttcaagggtcaactg 193
||||||| |||||||||||||||||| ||||||||
Sbjct: 68 cacagttgaaacctatgttgttcaagagtcaactg 102
>RF01029;mir-649;AL354046.5/23492-23603 9606:Homo sapiens (human)
Length = 112
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 159 cacagttcaaacctatgttgttcaagggtcaactg 193
||||||||||||| | |||||||||||||||||||
Sbjct: 68 cacagttcaaacccaagttgttcaagggtcaactg 102
>RF01029;mir-649;AANU01291060.1/24608-24497 9544:Macaca mulatta
(rhesus monkey)
Length = 112
Score = 52.0 bits (26), Expect = 3e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 140 tgcatataagtgggccccgcacagttcaaacctatgttgttcaagggtcaactg 193
||||||||||||| ||| | ||||||||||| ||||||||||||||||||||
Sbjct: 50 tgcatataagtggaccc-gtgcagttcaaacccgtgttgttcaagggtcaactg 102
>RF01029;mir-649;ABGA01058979.1/13509-13617 9601:Pongo abelii
(Sumatran orangutan)
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 161 cagttcaaacctatgttgttcaagggtcaactg 193
|||||||||||| ||||||||||| ||||||||
Sbjct: 70 cagttcaaacctgtgttgttcaagagtcaactg 102
>RF01029;mir-649;ABBA01023816.1/136724-136832 9606:Homo sapiens
(human)
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 161 cagttcaaacctatgttgttcaagggtcaactg 193
||||||||||| |||||||||||||||| ||||
Sbjct: 67 cagttcaaacccatgttgttcaagggtccactg 99
>RF00393;SNORA8;AADC01060874.1/76981-77102 9606:Homo sapiens (human)
Length = 122
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 158 gcacagttcaaacctatgttgttcaaggg 186
||||||||||||||| |||||||||||||
Sbjct: 17 gcacagttcaaacctgtgttgttcaaggg 45
>RF01029;mir-649;ABDC01197391.1/500-611 30608:Microcebus murinus
(gray mouse lemur)
Length = 112
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 161 cagttcaaacctatgttgttcaagggtcaact 192
||||||||| | ||||||||||||||||||||
Sbjct: 69 cagttcaaagccatgttgttcaagggtcaact 100
>RF01029;mir-649;ABRT010813507.1/722-833 9478:Tarsius syrichta
(Philippine tarsier)
Length = 112
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 161 cagttcaaacctatgttgttcaagggtc 188
||||||||||| ||||||||||||||||
Sbjct: 70 cagttcaaacccatgttgttcaagggtc 97
>RF01029;mir-649;AADB02002737.1/223635-223523 9606:Homo sapiens
(human)
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 131 aaaaagatttgcatataagtgggccccgcacagttcaaacctatgttgttcaagggtcaa 190
||||| || ||||||||||||| || | |||||||||||| | ||||||||||| ||||
Sbjct: 42 aaaaaaatctgcatataagtggacct-gtacagttcaaacccaagttgttcaaggatcaa 100
Query: 191 ctg 193
|||
Sbjct: 101 ctg 103
>RF01029;mir-649;CABD01043980.1/11211-11103 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 159 cacagttcaaacctatgttgttcaagggtcaactg 193
||||||||||||| | |||||||||||| ||||||
Sbjct: 65 cacagttcaaacccacgttgttcaagggccaactg 99
