miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00675;mir-145;AAGW01611070.1/1144-1232 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 5 caccttgtcctcacggtccagttttcccaggaatcccttagatgctgagatggggattcc 64
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2 caccttgtcctcggggtccagttttcccaggaatcccttagatgctaagatggggattcc 61
Query: 65 tggaaatactgttcttgaggtcatgg 90
||||||||||||||||||||||||||
Sbjct: 62 tggaaatactgttcttgaggtcatgg 87
>RF00675;mir-145;ABRQ01509527.1/1427-1341 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 5 caccttgtcctcacggtccagttttcccaggaatcccttagatgctgagatggggattcc 64
|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttacatgctaagacggggattcc 60
Query: 65 tggaaatactgttcttgaggtcatgg 90
||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatgg 86
>RF00675;mir-145;AAWZ01000591.1/17482-17570 28377:Anolis
carolinensis (green anole)
Length = 89
Score = 117 bits (59), Expect = 3e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 10 tgtcctcacggtccagttttcccaggaatcccttagatgctgagatggggattcctggaa 69
||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 7 tgtcctcggggtccagttttcccaggaatcccttagatgataagagggggattcctggaa 66
Query: 70 atactgttcttgaggtcatggct 92
|||||||||||| ||||||||||
Sbjct: 67 atactgttcttggggtcatggct 89
>RF00675;mir-145;AANG01343499.1/5356-5446 9685:Felis catus
(domestic cat)
Length = 91
Score = 105 bits (53), Expect = 1e-22
Identities = 77/81 (95%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 13 cctcacggtccagtttt-cccaggaatcccttagatgctgagat-ggggatt-cctggaa 69
||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||
Sbjct: 9 cctcacggtccagtttttcccaggaatcccttagatgctaagatgggggattccctggaa 68
Query: 70 atactgttcttgaggtcatgg 90
|||||||||||||||||||||
Sbjct: 69 atactgttcttgaggtcatgg 89
>RF00675;mir-145;CT029999.12/82723-82635 7955:Danio rerio
(zebrafish)
Length = 89
Score = 56.0 bits (28), Expect = 8e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 19 ggtccagttttcccaggaatcccttagatgct-gagatggggattcctggaaatactgtt 77
||||||||||||||||||||||||| | | || | ||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatcccttgggcaatcgaaagggggattcctggaaatactgtt 74
Query: 78 cttg 81
||||
Sbjct: 75 cttg 78
>RF00675;mir-145;AANH01007327.1/2171-2260 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ggggattcctggaaatactgttcttg 81
||||||||||||||||||||||||||
Sbjct: 54 ggggattcctggaaatactgttcttg 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 ggtccagttttcccaggaatccctt 43
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
>RF00675;mir-145;BAAF04072768.1/17019-16930 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 ggtccagttttcccaggaatccctt 43
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
