miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 266 bits (134), Expect = 7e-71
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 2 atatttgccgatgcagcatcatcaagattcccatcagaaattaaggaacctttcgagtaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atatttgccgatgcagcatcatcaagattcccatcagaaattaaggaacctttcgagtaa 75
Query: 62 aggaggtgaccgtgtaccaccccaactcaagccttaaagtttgtgaatcttgatgctgcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 aggaggtgaccgtgtaccaccccaactcaagccttaaagtttgtgaatcttgatgctgcc 15
Query: 122 gcatcggccaatat 135
||||||||||||||
Sbjct: 14 gcatcggccaatat 1
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 79.8 bits (40), Expect = 9e-15
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Minus
Query: 59 taaaggaggtgaccgtgtaccacccca---actcaagccttaaagtttgtgaatcttgat 115
|||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 80 taaaggaggtgaccgtatgccacccctctcactcaagccttaaagcttgtgaatcttgat 21
Query: 116 gctgccgcatcggccaat 133
| ||||||||| ||||||
Sbjct: 20 gatgccgcatccgccaat 3
Score = 75.8 bits (38), Expect = 1e-13
Identities = 86/101 (85%), Gaps = 7/101 (6%)
Strand = Plus / Minus
Query: 3 tatttgccgatgcagcatcatcaagattcccatcagaaattaaggaacctttcgagtaaa 62
||||||||||||||||||||||||||||||||| || ||||| ||||| || ||||
Sbjct: 182 tatttgccgatgcagcatcatcaagattcccat----aaaaaaggaccctttggactaaa 127
Query: 63 ggaggtgaccgtgtaccacccc---aactcaagccttaaag 100
|||||||||||| | ||||||| |||||||||||||||
Sbjct: 126 ggaggtgaccgtatgccacccctctcactcaagccttaaag 86
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 3 tatttgccgatgcagcatcatcaagattccca 34
||||||| ||||||||||||||||||||||||
Sbjct: 124 tatttgctgatgcagcatcatcaagattccca 93
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattcccatc 36
|||||||||||||||||||||||||| ||||
Sbjct: 108 ttgccgatgcagcatcatcaagattctcatc 78
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattcccat 35
|||||| |||||||||||||||||||||||
Sbjct: 197 ttgccgctgcagcatcatcaagattcccat 168
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
||||||||||||||||||||||||||
Sbjct: 112 ttgccgatgcagcatcatcaagattc 87
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
||||||||||||||||||||||||||
Sbjct: 137 ttgccgatgcagcatcatcaagattc 112
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
||||||||||||||||||||||||||
Sbjct: 158 ttgccgatgcagcatcatcaagattc 133
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattcccat 35
|||||| |||||||||||||||||||||||
Sbjct: 152 ttgccgctgcagcatcatcaagattcccat 123
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 2 atatttgccgatgcagcatcatcaagattc 31
|||||||| |||||||||||||||||||||
Sbjct: 143 atatttgctgatgcagcatcatcaagattc 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 103 tgtgaatcttgatgctgccgcatcggccaata 134
|||||||||||||| ||||||||| |||||||
Sbjct: 33 tgtgaatcttgatgatgccgcatccgccaata 2
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 2 atatttgccgatgcagcatcatcaagattcccat 35
|||| ||| |||||||||||||||||||||||||
Sbjct: 135 atatctgctgatgcagcatcatcaagattcccat 102
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
||||||||||||||||||||||||||
Sbjct: 117 ttgccgatgcagcatcatcaagattc 92
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
||||||||||||||||||||||||||
Sbjct: 116 ttgccgatgcagcatcatcaagattc 91
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 9 ccgatgcagcatcatcaagattccca 34
||||||||||||||||||||||||||
Sbjct: 231 ccgatgcagcatcatcaagattccca 206
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 11 gatgcagcatcatcaagattcccat 35
|||||||||||||||||||||||||
Sbjct: 122 gatgcagcatcatcaagattcccat 98
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattccca 34
|||| ||||||||||||||||||||||||
Sbjct: 93 ttgctgatgcagcatcatcaagattccca 65
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattccca 34
|||||| ||||||||||||||||||||||
Sbjct: 140 ttgccgctgcagcatcatcaagattccca 112
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 tatttgccgatgcagcatcatcaagattc 31
||||||| |||||||||||||||||||||
Sbjct: 167 tatttgctgatgcagcatcatcaagattc 139
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattccca 34
|||||| ||||||||||||||||||||||
Sbjct: 136 ttgccgctgcagcatcatcaagattccca 108
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 5 tttgccgatgcagcatcatcaagattcccatca 37
||||| ||||||||||||||||||||| |||||
Sbjct: 109 tttgctgatgcagcatcatcaagattctcatca 77
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gccgatgcagcatcatcaagattc 31
||||||||||||||||||||||||
Sbjct: 167 gccgatgcagcatcatcaagattc 144
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 5 tttgccgatgcagcatcatcaagattcccatc 36
||||| ||||||||||||||||||||| ||||
Sbjct: 119 tttgctgatgcagcatcatcaagattctcatc 88
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 gccgatgcagcatcatcaagattccca 34
|||| ||||||||||||||||||||||
Sbjct: 132 gccgctgcagcatcatcaagattccca 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 96 taaagtttgtgaatcttgatgctgccgcatcggc 129
||||||||||||||||||||| ||| |||||||
Sbjct: 34 taaagtttgtgaatcttgatggtgctccatcggc 1
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 atgcagcatcatcaagattccca 34
|||||||||||||||||||||||
Sbjct: 145 atgcagcatcatcaagattccca 123
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 atgcagcatcatcaagattccca 34
|||||||||||||||||||||||
Sbjct: 143 atgcagcatcatcaagattccca 121
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 atgcagcatcatcaagattccca 34
|||||||||||||||||||||||
Sbjct: 180 atgcagcatcatcaagattccca 158
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 cgatgcagcatcatcaagattc 31
||||||||||||||||||||||
Sbjct: 205 cgatgcagcatcatcaagattc 184
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
|||||| |||||||||||||||||||
Sbjct: 109 ttgccgctgcagcatcatcaagattc 84
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
|||| |||||||||||||||||||||
Sbjct: 155 ttgctgatgcagcatcatcaagattc 130
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 ttgccgatgcagcatcatcaagattc 31
|||| |||||||||||||||||||||
Sbjct: 86 ttgctgatgcagcatcatcaagattc 61
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gatgcagcatcatcaagattcccatc 36
||||||||||||||||||||| ||||
Sbjct: 130 gatgcagcatcatcaagattctcatc 105
