miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 264 bits (133), Expect = 3e-70
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatgttaagagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatgttaagagtt 64
Query: 61 aaatctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttgatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aaatctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttgatgat 124
Query: 121 gctgcatcggcaa 133
|||||||||||||
Sbjct: 125 gctgcatcggcaa 137
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 125 bits (63), Expect = 2e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 63 atctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttgatgatgc 122
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atctttctttctttctgatcatctgccaaagttctttggaagtgagaatcttgatgatgc 147
Query: 123 tgcatcggcaa 133
|||||||||||
Sbjct: 148 tgcatcggcaa 158
Score = 60.0 bits (30), Expect = 8e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgat 50
||||||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 5 ttgcgggtgctgcatcaccaagattcacatgcaaatgcatggccgatgat 54
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatg 51
||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 5 ttgcgggtgtagcatcatcaagattcacatgcaaatgcacggttggtgatg 55
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 97 tttggaagtgagaatcttgatgatgctgcatcggcaa 133
|||| ||||||||||||||||||||||||||| ||||
Sbjct: 119 tttgaaagtgagaatcttgatgatgctgcatcagcaa 155
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 87 gccaaagttctttggaagtgagaatcttgatgatgctgcatcg 129
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 163 gccaaagttctttgagagtgagaatcttgatgatgctgcatcg 205
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 gggtggagcatcatcaagattcacatgcaaat 36
||||| ||||||||||||||||||||||||||
Sbjct: 9 gggtgtagcatcatcaagattcacatgcaaat 40
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 agcatcatcaagattcacatgcaaatgcacgg 42
||||||||||||||||||||||||||||||||
Sbjct: 15 agcatcatcaagattcacatgcaaatgcacgg 46
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcggcaa 108
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||||||||
Sbjct: 84 tgagaatcttgatgatgctgcatcggcaa 112
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 95 tctttggaagtgagaatcttgatgatgctgcat 127
||||| |||||||||||||||||||||||||||
Sbjct: 119 tcttttgaagtgagaatcttgatgatgctgcat 151
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 agcatcatcaagattcacatgcaaatgca 39
|||| ||||||||||||||||||||||||
Sbjct: 15 agcaccatcaagattcacatgcaaatgca 43
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatcggcaa 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgcaaa 35
|||| |||| |||||||||||||||||||||||||
Sbjct: 5 ttgcaggtgtagcatcatcaagattcacatgcaaa 39
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatcggcaa 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgc 32
|||| |||| ||||||||||||||||||||||
Sbjct: 5 ttgcaggtgtagcatcatcaagattcacatgc 36
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggc 131
|||||||||||||||||||||||||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggc 167
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 94 ttctttggaagtgagaatcttgatgatgctgcatc 128
||||||| | |||||||||||||||||||||||||
Sbjct: 86 ttctttgaaggtgagaatcttgatgatgctgcatc 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgcaaa 35
|||| |||| |||||||||||||||||||| ||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacattcaaa 39
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcggcaa 133
||||||||||||||||||||||||||
Sbjct: 105 gaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcggcaa 133
||||||||||||||||||||||||||
Sbjct: 154 gaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 95 tctttggaagtgagaatcttgatgatgctgcatc 128
|||||| | |||||||||||||||||||||||||
Sbjct: 118 tctttgaaggtgagaatcttgatgatgctgcatc 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgcaaa 35
|||| |||| ||||||| |||||||||||||||||
Sbjct: 5 ttgcaggtgcagcatcaccaagattcacatgcaaa 39
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcaca 29
|||||| ||||||||||||||||||||||
Sbjct: 5 ttgcggatggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcggcaa 133
||||||||||||||||||| ||||||
Sbjct: 172 gaatcttgatgatgctgcagcggcaa 197
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||| ||||||
Sbjct: 81 tgagaatcttgatgatgctgcagcggcaa 109
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 gtgagaatcttgatgatgctgcatc 128
|||||||||||||||||||||||||
Sbjct: 97 gtgagaatcttgatgatgctgcatc 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacatgcaaat 36
|||| |||| |||||||||||||||||||| |||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacattcaaat 40
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||| ||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcaca 29
|||| ||||||||||||||||||||||||
Sbjct: 5 ttgctggtggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||| ||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagcaa 86
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||| ||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagcaa 164
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcaca 29
|||||| ||||||||||||||||||||||
Sbjct: 5 ttgcggatggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcggcaa 133
||||||||||||||||||| ||||||
Sbjct: 111 gaatcttgatgatgctgcagcggcaa 136
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||| ||||
Sbjct: 90 tgagaatcttgatgatgctgcatcagcaa 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ttgcgggtggagcatcatcaagattcacat 30
|||| |||| ||||||||||||||||||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacat 34
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatcggcaa 133
|||||||||||||||||||||||| ||||
Sbjct: 80 tgagaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatc 128
||||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgcatc 106
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatc 128
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatc 128
||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatc 139
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatc 128
||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatc 130
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatc 128
||||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcatc 102
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcatc 128
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 agtgagaatcttgatgatgctgcatcggcaa 133
|||| ||||||||||||||||||||| ||||
Sbjct: 91 agtgggaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgcat 127
|||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcat 101
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcgg 130
|||||||||||||||||||||||
Sbjct: 209 gaatcttgatgatgctgcatcgg 231
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcggcaa 133
||||||||||||||||||||| ||||
Sbjct: 68 gaatcttgatgatgctgcatcagcaa 93
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tggagcatcatcaagattcaca 29
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgca 112
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tggagcatcatcaagattcaca 29
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcggcaa 133
||||||||||||||||||| ||||||
Sbjct: 115 gaatcttgatgatgctgcagcggcaa 140
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tggagcatcatcaagattcaca 29
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gaatcttgatgatgctgcatcggcaa 133
||||||||||||||||||| ||||||
Sbjct: 127 gaatcttgatgatgctgcagcggcaa 152
