miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 274 bits (138), Expect = 3e-73
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 aacatgttgcctttatctgcatttgcacctgcaccttacttgtttctttcttttgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aacatgttgcctttatctgcatttgcacctgcaccttacttgtttctttcttttgttttt 63
Query: 61 gactccaaaaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gactccaaaaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggt 123
Query: 121 gcaggtgaatgccatgtt 138
||||||||||||||||||
Sbjct: 124 gcaggtgaatgccatgtt 141
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 69.9 bits (35), Expect = 9e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 4 atgttgcctttatctgcatttgcacctgcacctta 38
|||||||||||||||||||||||||||||||||||
Sbjct: 7 atgttgcctttatctgcatttgcacctgcacctta 41
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 4 atgttgcctttatctgcatttgcacctgcacctta 38
||||| |||||||||||||||||||||||||||||
Sbjct: 7 atgtttcctttatctgcatttgcacctgcacctta 41
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 cctttatctgcatttgcacctgcaccttacttgtttctt 48
||||||||||||||||||||||||| ||||||| |||||
Sbjct: 12 cctttatctgcatttgcacctgcactttacttggttctt 50
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 10 cctttatctgcatttgcacctgcaccttacttgtttctt 48
||||||||||||||||||||||||| ||||||| |||||
Sbjct: 146 cctttatctgcatttgcacctgcactttacttggttctt 108
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 atgttgcctttatctgcatttgcacctgca 33
||||||||||||||||||||||||||||||
Sbjct: 7 atgttgcctttatctgcatttgcacctgca 36
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 102 ttgaggtgcaggtgcaggtgcaggtgaatgccat 135
|||||||||||||||| |||||||||||||||||
Sbjct: 133 ttgaggtgcaggtgcaagtgcaggtgaatgccat 166
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 gcctttatctgcatttgcacctgcacctta 38
||||||||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgcacctta 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 aggtgcaggtgcaggtgcaggtgaatgcca 134
||||||||||| |||||||| |||||||||
Sbjct: 125 aggtgcaggtgaaggtgcagatgaatgcca 154
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tttatctgcatttgcacctgcacctt 37
||||||||||||||||||||||||||
Sbjct: 11 tttatctgcatttgcacctgcacctt 36
>RF01005;MIR530;CAAP02002388.1/48571-48426 29760:Vitis vinifera
Length = 146
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tttatctgcatttgcacctgcaccttac 39
|||||||||||||| |||||||||||||
Sbjct: 14 tttatctgcatttgtacctgcaccttac 41
>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
(castor bean)
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tttatctgcatttgcacctgcac 34
|||||||||||||||||||||||
Sbjct: 16 tttatctgcatttgcacctgcac 38
>RF01005;MIR530;AM473995.2/8334-8489 29760:Vitis vinifera
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tttatctgcatttgcacctgcacctta 38
||||||||||||||||| |||||||||
Sbjct: 21 tttatctgcatttgcacttgcacctta 47