miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 246 bits (124), Expect = 6e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgcaccttacttgtttctttcttttgtttttgactccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgcaccttacttgtttctttcttttgtttttgactccaa 71
Query: 61 aaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggtgcaggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggtgcaggtga 131
Query: 121 atgc 124
||||
Sbjct: 132 atgc 135
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 2 cctttatctgcatttgcacctgcaccttacttgtttctt 40
||||||||||||||||||||||||| ||||||| |||||
Sbjct: 12 cctttatctgcatttgcacctgcactttacttggttctt 50
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cctttatctgcatttgcacctgcaccttacttgtttctt 40
||||||||||||||||||||||||| ||||||| |||||
Sbjct: 146 cctttatctgcatttgcacctgcactttacttggttctt 108
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgcacctta 30
||||||||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgcacctta 41
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgcacctta 30
||||||||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgcacctta 41
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 cctttatctgcatttgcacctgcacctta 30
|||||||||||||||||||||||||||||
Sbjct: 13 cctttatctgcatttgcacctgcacctta 41
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 94 ttgaggtgcaggtgcaggtgcaggtgaatgc 124
|||||||||||||||| ||||||||||||||
Sbjct: 133 ttgaggtgcaggtgcaagtgcaggtgaatgc 163
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgca 25
|||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgca 36
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 tttatctgcatttgcacctgcacctt 29
||||||||||||||||||||||||||
Sbjct: 11 tttatctgcatttgcacctgcacctt 36
>RF01005;MIR530;CAAP02002388.1/48571-48426 29760:Vitis vinifera
Length = 146
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tttatctgcatttgcacctgcaccttac 31
|||||||||||||| |||||||||||||
Sbjct: 14 tttatctgcatttgtacctgcaccttac 41
>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
(castor bean)
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tttatctgcatttgcacctgcac 26
|||||||||||||||||||||||
Sbjct: 16 tttatctgcatttgcacctgcac 38
>RF01005;MIR530;AM473995.2/8334-8489 29760:Vitis vinifera
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 tttatctgcatttgcacctgcacctta 30
||||||||||||||||| |||||||||
Sbjct: 21 tttatctgcatttgcacttgcacctta 47
