miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01003913.1/128002-128091 3694:Populus
trichocarpa
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 acccaccgatgttgggtctggctgggcag 85
|||||||||| ||||||||||||||||||
Sbjct: 1 acccaccgatcttgggtctggctgggcag 29
>RF00779;MIR474;AARH01004140.1/105554-105455 3694:Populus
trichocarpa
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gggtctcgcttggcagccagaccca 27
|||||||||||||||||||||||||
Sbjct: 46 gggtctcgcttggcagccagaccca 70
>RF00779;MIR474;AARH01005271.1/145354-145437 3694:Populus
trichocarpa
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 2 cgggtctcgcttggcagccagacccaaca 30
||||||| |||||||||||||||||||||
Sbjct: 13 cgggtctggcttggcagccagacccaaca 41
>RF00779;MIR474;AARH01008269.1/65546-65439 3694:Populus
trichocarpa
Length = 108
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 57 acccaccgatgttgggtctggctgggcag 85
|||||||||| ||||||||||||||||||
Sbjct: 49 acccaccgatcttgggtctggctgggcag 21
>RF00779;MIR474;AARH01010364.1/9503-9585 3694:Populus trichocarpa
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 gggtctcgcttggcagccagacccaaca 30
|||||| |||||||||||||||||||||
Sbjct: 14 gggtctggcttggcagccagacccaaca 41
>RF00779;MIR474;AARH01010364.1/10181-10055 3694:Populus
trichocarpa
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 gggtctcgcttggcagccagacccaaca 30
|||||| |||||||||||||||||||||
Sbjct: 36 gggtctggcttggcagccagacccaaca 9
>RF00779;MIR474;AARH01032507.1/694-574 3694:Populus trichocarpa
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 gcttggcagccagacccaacacg 32
|||||||||||||||||||||||
Sbjct: 94 gcttggcagccagacccaacacg 72
>RF00779;MIR474;AARH01011388.1/3867-3951 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 32 gttattgggtccgactcgcagtcacaccca 61
||||||||||| | ||||||||||||||||
Sbjct: 43 gttattgggtctggctcgcagtcacaccca 72
>RF00779;MIR474;AARH01010530.1/10953-10860 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 gggtctcgcttggcagccagacccaa 28
||||||||||||| ||||||||||||
Sbjct: 13 gggtctcgcttggtagccagacccaa 38
