miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AC214101.1/22118-22003 3694:Populus trichocarpa
Length = 116
Score = 200 bits (101), Expect = 3e-51
Identities = 110/113 (97%)
Strand = Plus / Minus
Query: 3 ccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaacg 62
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ccaaggcttttgggtttggagttgcagccagactaaagagcgttgagtgtggttgaaacg 54
Query: 63 tcaggcccaagaaccttgggtttggctgcaacaacaaacccaagagcgttggg 115
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 53 tcaggcccaagaaccttgggttttgctgcaacaacaaacccaagagcgttggg 1
>RF00779;MIR474;AARH01002518.1/140771-140688 3694:Populus
trichocarpa
Length = 84
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 59 aacgtcaggcccaagaaccttgggtttggctgcaacaacaaacccaa 105
||||||| | |||||| |||||||||||||||||||| || ||||||
Sbjct: 57 aacgtcaagtccaagagccttgggtttggctgcaacaccagacccaa 11
>RF00779;MIR474;AARH01003978.1/155334-155436 3694:Populus
trichocarpa
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 3 ccaaggctcttgggcttggagttgcagccagac 35
||||||||||||||| ||||||||| |||||||
Sbjct: 100 ccaaggctcttgggcctggagttgccgccagac 68
>RF00779;MIR474;AARH01017174.1/1000-918 3694:Populus trichocarpa
Length = 83
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 59 aacgtcaggcccaagaaccttgggtttggctgcaacaacaaacccaagagcgttgg 114
|||||||| ||||||| ||||| || ||||||||||| || |||||| ||| ||||
Sbjct: 56 aacgtcagacccaagagccttgagtctggctgcaacaccagacccaaaagccttgg 1
>RF00779;MIR474;AARH01003328.1/198960-199072 3694:Populus
trichocarpa
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 ccaagaaccttgggtttggctgcaaca 95
|||||| ||||||||||||||||||||
Sbjct: 111 ccaagagccttgggtttggctgcaaca 85
>RF00779;MIR474;AARH01004701.1/71018-70904 3694:Populus trichocarpa
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 78 ttgggtttggctgcaacaacaaacccaagagcgttgggt 116
|||||| | ||||||||| |||||||||||||||||||
Sbjct: 71 ttgggtctagctgcaacactaaacccaagagcgttgggt 33
