miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
          (sorghum)
          Length = 146

 Score = 93.7 bits (47), Expect = 9e-19
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                         
Query: 24 tgtgcatggtggagaagcagggcacgtgcattaccatccaatgccgc 70
          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgtgcatggtggagaagcagggcacgtgcattaccatccaatgccgc 48



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                        
Query: 130 tggacggatggttcttcatgtgcccatcttctccaccgagcacaa 174
           |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tggatggatggttcttcatgtgcccatcttctccaccgagcacaa 146




>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
          Japonica Group
          Length = 113

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 25 gtgcatggtggagaagcagggcacgtgcattaccatcca 63
          ||||| |||||||||||||||||||||||||||||||||
Sbjct: 3  gtgcacggtggagaagcagggcacgtgcattaccatcca 41



 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 135 ggatggttcttcatgtgcccatcttctccaccgagcac 172
           |||||||||||||||||||| |||||||||||||||||
Sbjct: 74  ggatggttcttcatgtgcccgtcttctccaccgagcac 111




>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
          Length = 146

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
          Length = 115

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
          cress)
          Length = 171

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
          cress)
          Length = 170

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
          (thale cress)
          Length = 169

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
          trichocarpa
          Length = 157

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
          (castor bean)
          Length = 124

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
          Length = 160

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
          Length = 159

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
          Length = 94

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
          Length = 133

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 33 tggagaagcagggcacgtgcattac 57
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
          Japonica Group
          Length = 180

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 31 ggtggagaagcagggcacgtgcatt 55
          |||||||||||||||||||||||||
Sbjct: 9  ggtggagaagcagggcacgtgcatt 33




>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
          (sorghum)
          Length = 151

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 ggtggagaagcagggcacgtgcat 54
          ||||||||||||||||||||||||
Sbjct: 9  ggtggagaagcagggcacgtgcat 32




>RF00647;MIR164;AC226813.1/114113-114237 63629:Oryza minuta
          Length = 125

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 24 tgtgcatggtggagaagcagggcacgtg 51
          |||||| |||||||||||||||||||||
Sbjct: 2  tgtgcagggtggagaagcagggcacgtg 29



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 135 ggatggttcttcatgtgcccatcttctccaccgagcac 172
           |||||| | |||||||| || |||||||||||||||||
Sbjct: 86  ggatgggtgttcatgtgtccgtcttctccaccgagcac 123




>RF00647;MIR164;ABRL01001123.1/4697-4828 65489:Oryza barthii
          Length = 132

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 24 tgtgcatggtggagaagcagggcacgtg 51
          |||||| |||||||||||||||||||||
Sbjct: 2  tgtgcagggtggagaagcagggcacgtg 29



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 135 ggatggttcttcatgtgcccatcttctccaccgagcac 172
           |||||||  |||||||| || |||||||||||||||||
Sbjct: 93  ggatggtcgttcatgtgtccgtcttctccaccgagcac 130




>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
          Length = 99

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 27 gcatggtggagaagcagggcacgtgca 53
          ||||| |||||||||||||||||||||
Sbjct: 5  gcatgatggagaagcagggcacgtgca 31




>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
          Length = 80

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tggtggagaagcagggcacgtgc 52
          |||||||||||||||||||||||
Sbjct: 8  tggtggagaagcagggcacgtgc 30




>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
          (thale cress)
          Length = 98

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 28 catggtggagaagcagggcacgtgca 53
          |||| |||||||||||||||||||||
Sbjct: 6  catgttggagaagcagggcacgtgca 31




>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
          (sorghum)
          Length = 179

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 tggagaagcagggcacgtgcat 54
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32




>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
          Indica Group
          Length = 142

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 tggagaagcagggcacgtgcat 54
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32