miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 109 bits (55), Expect = 7e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 16 gagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacacta 75
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 62
Query: 76 aatagctactg 86
|||||||||||
Sbjct: 63 aatagctactg 73
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 109 bits (55), Expect = 7e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 14 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 73
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 74 taaatagctac 84
|||||||||||
Sbjct: 61 taaatagctac 71
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 105 bits (53), Expect = 1e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 14 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 73
||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 74 taaatagctactg 86
|||| ||||||||
Sbjct: 61 taaacagctactg 73
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 14 cagagctgtggagtgtgacaatggtgtttgtgtccaaact---atcaaacgccattatca 70
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 58
Query: 71 cactaaatagc 81
|||||||||||
Sbjct: 59 cactaaatagc 69
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 atcaaacgccattatcacactaaata 79
||||||||||||||||||||||||||
Sbjct: 42 atcaaacgccattatcacactaaata 67
>RF00684;mir-122;AAGU02115256.1/941-1011 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 50.1 bits (25), Expect = 5e-06
Identities = 60/68 (88%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 20 tgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 79
|||||||||||||| |||||||||| | || |||||| |||||| |||||||||||||
Sbjct: 8 tgtggagtgtgacat--gtgtttgtgttcgaaatatcaa-cgccat-atcacactaaata 63
Query: 80 gctactgt 87
||||||||
Sbjct: 64 gctactgt 71
