miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01030435.1/1043-960 3694:Populus trichocarpa
Length = 84
Score = 127 bits (64), Expect = 4e-29
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 55 ttcaaaaatgagctgggtctggctggacaacgggacctaatatccttggctctggttgtg 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ttcaaaaatgagctgggtctggctggacaacgggacctaatatccttggctctggttgtg 25
Query: 115 cagc 118
||||
Sbjct: 24 cagc 21
>RF00779;MIR474;AARH01016040.1/6050-6173 3694:Populus trichocarpa
Length = 124
Score = 73.8 bits (37), Expect = 5e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 10 caggacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaaaa 62
||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||
Sbjct: 29 caggacccaatagtgttgggtctcgctcagccaaacccaaaacactttaaaaa 81
>RF00779;MIR474;AARH01030435.1/941-893 3694:Populus trichocarpa
Length = 49
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1 gctgcacaacaggacccaatagtgttgggtctggct 36
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gctgcacaacaggacccaatagtgttgggtctggct 1
>RF00779;MIR474;AARH01002460.1/28793-28659 3694:Populus
trichocarpa
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 13 gacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaa 60
||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct: 48 gacccaatactgttgagtctggctcagccagacccaaaacacttcaaa 1
>RF00779;MIR474;AARH01010364.1/2118-1996 3694:Populus trichocarpa
Length = 123
Score = 60.0 bits (30), Expect = 7e-09
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 13 gacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaaaatgagctgggt 72
|||||||||||||||||| ||||| || ||||| ||||||||| ||||| | |||||
Sbjct: 31 gacccaatagtgttgggtttggctaagtgagacccaaaacactttaaaaaaaggttgggt 90
Query: 73 ctggctggacaacgggacctaatatccttg 102
|||||||| || ||| ||| ||| ||||||
Sbjct: 91 ctggctgggcagcggaacccaatgtccttg 120
>RF00779;MIR474;AARH01016040.1/1945-1897 3694:Populus trichocarpa
Length = 49
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 11 aggacccaatagtgttgggtctggct 36
||||||||||||||||||||||||||
Sbjct: 26 aggacccaatagtgttgggtctggct 1
>RF00779;MIR474;AC209095.1/18230-18324 3694:Populus trichocarpa
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 caggacccaatagtgttgggtct 32
|||||||||||||||||||||||
Sbjct: 52 caggacccaatagtgttgggtct 30
>RF00779;MIR474;AARH01002460.1/28223-28175 3694:Populus
trichocarpa
Length = 49
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 14 acccaatagtgttgggtctggct 36
|||||||||||||||||||||||
Sbjct: 23 acccaatagtgttgggtctggct 1
