miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01032507.1/694-574 3694:Populus trichocarpa
Length = 121
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1 tgggtccagcttggcagccagacccaacacgggcccaaaacacttccaaaaggagccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgggtccagcttggcagccagacccaacacgggcccaaaacacttccaaaaggagccagt 43
Query: 61 agagttgggtcctgctgcccagcagcaccca 91
|||||||||||||||||||||||||||||||
Sbjct: 42 agagttgggtcctgctgcccagcagcaccca 12
>RF00779;MIR474;AARH01005447.1/11228-11352 3694:Populus
trichocarpa
Length = 125
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 32 ggcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagcagcaccca 91
||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 71 ggcccaaaagacttttaaaaggagccaacaacgttgggtcctgctgcccagcagcaccca 12
>RF00779;MIR474;AARH01004172.1/18437-18316 3694:Populus trichocarpa
Length = 122
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 32 ggcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagca 84
||||||| ||||||||||| |||||||| || ||||||| ||||||||||||
Sbjct: 59 ggcccaacacacttccaaagggagccagcaggattgggtcatgctgcccagca 111
>RF00779;MIR474;AARH01008283.1/4922-5043 3694:Populus trichocarpa
Length = 122
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 34 cccaaaacacttccaaaaggagccagtagagttgggtcctgctgccc 80
||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct: 52 cccaaaacacttccaaaaggagccaagaatgttgggtcctcctgccc 98
>RF00779;MIR474;AARH01010370.1/4472-4337 3694:Populus trichocarpa
Length = 136
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 33 gcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagcagcaccca 91
|||||||||||||| ||||||||| | | |||||||| |||||||||||||||||||
Sbjct: 66 gcccaaaacacttctaaaaggagcaacaac-gttgggtcttgctgcccagcagcaccca 123
>RF00779;MIR474;AARH01019362.1/1679-1575 3694:Populus trichocarpa
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 32 ggcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagca 84
|||||||||||||||||||| |||||| | |||| |||||| |||||||||
Sbjct: 33 ggcccaaaacacttccaaaaagagccaacaacgttgtgtcctgttgcccagca 85
>RF00779;MIR474;AC216472.1/80331-80228 3694:Populus trichocarpa
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 32 ggcccaaaacacttccaaaaggagcca 58
|||||||||||||||||||| ||||||
Sbjct: 65 ggcccaaaacacttccaaaaagagcca 91
>RF00779;MIR474;AARH01003374.1/8270-8166 3694:Populus trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 34 cccaaaacacttccaaaaggagccagtagagttgggtcctgc 75
|||||||||||||||||| | |||| ||| |||||| |||||
Sbjct: 70 cccaaaacacttccaaaaagtgccaatagcgttgggccctgc 29
>RF00779;MIR474;AC216917.1/73080-72946 3694:Populus trichocarpa
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 34 cccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagc 83
|||||||||||| ||||| | |||| ||| |||||| |||||| ||||||
Sbjct: 69 cccaaaacactttcaaaaagtgccaatagtgttgggccctgcttcccagc 118
>RF00779;MIR474;AARH01022561.1/3145-3010 3694:Populus trichocarpa
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 32 ggcccaaaacacttccaaaaggagcc 57
|||||||||||||||||||| |||||
Sbjct: 65 ggcccaaaacacttccaaaaagagcc 90
