miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00675;mir-145;AAGW01611070.1/1144-1232 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 159 bits (80), Expect = 8e-39
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 8 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 67
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 caccttgtcctcggggtccagttttcccaggaatcccttagatgctaagatggggattcc 61
Query: 68 tggaaatactgttcttgaggtcatggtt 95
||||||||||||||||||||||||||||
Sbjct: 62 tggaaatactgttcttgaggtcatggtt 89
>RF00675;mir-145;ABRQ01509527.1/1427-1341 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 8 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 67
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttacatgctaagacggggattcc 60
Query: 68 tggaaatactgttcttgaggtcatggt 94
|||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggt 87
>RF00675;mir-145;AAWZ01000591.1/17482-17570 28377:Anolis
carolinensis (green anole)
Length = 89
Score = 121 bits (61), Expect = 2e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 13 tgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaa 72
||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 7 tgtcctcggggtccagttttcccaggaatcccttagatgataagagggggattcctggaa 66
Query: 73 atactgttcttgaggtcatgg 93
|||||||||||| ||||||||
Sbjct: 67 atactgttcttggggtcatgg 87
>RF00675;mir-145;AANG01343499.1/5356-5446 9685:Felis catus
(domestic cat)
Length = 91
Score = 117 bits (59), Expect = 3e-26
Identities = 80/83 (96%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 16 cctcacggtccagtttt-cccaggaatcccttagatgctaagat-ggggatt-cctggaa 72
||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 9 cctcacggtccagtttttcccaggaatcccttagatgctaagatgggggattccctggaa 68
Query: 73 atactgttcttgaggtcatggtt 95
|||||||||||||||||||||||
Sbjct: 69 atactgttcttgaggtcatggtt 91
>RF00675;mir-145;CT029999.12/82723-82635 7955:Danio rerio
(zebrafish)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 ggggattcctggaaatactgttcttg 84
||||||||||||||||||||||||||
Sbjct: 53 ggggattcctggaaatactgttcttg 78
>RF00675;mir-145;AANH01007327.1/2171-2260 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 ggggattcctggaaatactgttcttg 84
||||||||||||||||||||||||||
Sbjct: 54 ggggattcctggaaatactgttcttg 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 ggtccagttttcccaggaatccctt 46
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
>RF00675;mir-145;BAAF04072768.1/17019-16930 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 ggtccagttttcccaggaatccctt 46
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
