miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 135 bits (68), Expect = 1e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 5 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaa 64
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct: 1 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatgtaactgtattgggga 60
Query: 65 cattttgcattcatagttttgtatcaat 92
|| || ||||||||||||||||||||||
Sbjct: 61 cacttggcattcatagttttgtatcaat 88
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 129 bits (65), Expect = 7e-30
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 5 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaa 64
||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 1 gaaagatgcctaactatttttgcgatgtgttcctaatatgtactataagtgtattgggaa 60
Query: 65 cattttgcattcatagttttgtatcaatc 93
|||||||||||||||||||||| ||||||
Sbjct: 61 cattttgcattcatagttttgtgtcaatc 89
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 125 bits (63), Expect = 1e-28
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 6 aaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaac 65
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2 aaagatgctgaactatttttgcgatgtgttcctaatatgtaataagaatgtattgggaac 61
Query: 66 attttgcattcatagttttgtatcaat 92
|||||||||| |||||||||||||||
Sbjct: 62 attttgcatttgtagttttgtatcaat 88
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 119 bits (60), Expect = 7e-27
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 5 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaa 64
|||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||
Sbjct: 1 gaaagatgctaaactatttttgcgatatgttcctaatatgttatataagtatattgggaa 60
Query: 65 cattttgcattcatagttttgtatcaat 92
|||||||||| ||||||||||||||||
Sbjct: 61 cattttgcatctatagttttgtatcaat 88
>RF00708;mir-450;ABRO01450845.1/1546-1456 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 109 bits (55), Expect = 7e-24
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 6 aaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaac 65
|||||||||| |||||||||||||||||||| |||||||| || | ||||||||||| ||
Sbjct: 2 aaagatgctagactatttttgcgatgtgttcataatatgttatatgaatgtattggggac 61
Query: 66 attttgcattcatagttttgtatcaat 92
|| ||||||||||||||| ||||||||
Sbjct: 62 atcttgcattcatagtttcgtatcaat 88
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 9 gatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacatt 68
||||| |||||||||||| ||||||||||||||||| ||| ||| ||||||||||| |||
Sbjct: 5 gatgcaaaactatttttgtgatgtgttcctaatatgaaatataagtgtattgggaatatt 64
Query: 69 ttgcattcatagttttgtatcaat 92
|||||| ||| |||||||||||||
Sbjct: 65 ttgcatccatggttttgtatcaat 88
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 13 ctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacattttgc 72
||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 9 ctaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacattttgc 68
Query: 73 attcatagttttgtatcaat 92
|| |||||||||||||||
Sbjct: 69 atgtgtagttttgtatcaat 88
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 5 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaa 64
||||||||||||||| |||||||||| ||||||||||||| | | ||| | |||||||||
Sbjct: 1 gaaagatgctaaactgtttttgcgatatgttcctaatatgcactataactatattgggaa 60
Query: 65 cattttgcattcatagttttgt 86
|||||||||| |||||||||||
Sbjct: 61 cattttgcatgcatagttttgt 82
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 5 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaa 64
|||||||||| |||| |||||||||||||||||||||||| | | | || ||||||||
Sbjct: 1 gaaagatgctgaactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggag 60
Query: 65 cattttgcattcatagttttgtatcaat 92
|||||||||| ||| |||||||||||||
Sbjct: 61 cattttgcatgcatggttttgtatcaat 88
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 19 tatttttgcgatgtgttcctaatatgtaatctaaatgtat--tgggaacattttgcattc 76
||||||||| || ||||||| ||||||||| || | |||| |||||||||||||||| |
Sbjct: 15 tatttttgcaatatgttcctgatatgtaatatataagtatattgggaacattttgcatcc 74
Query: 77 atagttttgtatcaat 92
||||||||||||||||
Sbjct: 75 atagttttgtatcaat 90
>RF00708;mir-450;ABRQ01123746.1/420-330 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 16 aactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacattttgcatt 75
||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 12 aactatttttgtgatgtgttcctaatattgtgtataaatatattgggaacattttgcatt 71
Query: 76 catagttttgtatcaat 92
| |||||||||||||
Sbjct: 72 tgtggttttgtatcaat 88
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 21 tttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacattttgcattcatag 80
||||||||||||||||||||||||| | ||| | ||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
Query: 81 ttttgtatcaat 92
||||| |||||
Sbjct: 77 ctttgtgtcaat 88
>RF00708;mir-450;BX649621.5/156260-156170 10090:Mus musculus
(house mouse)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 7 aagatgctaaactatttttgcgatgtgttcctaatatgta 46
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 3 aagatgctgaactatttttgcgatgtgttcctaatatgta 42
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 19 tatttttgcgatgtgttcct-aatatgtaatctaaatgtattgggaacattttgcattca 77
||||||||| || ||||||| ||||||||| | || |||||||||| |||||||||| ||
Sbjct: 15 tatttttgcaatatgttcctgaatatgtaagccaagtgtattgggagcattttgcatcca 74
Query: 78 tagttttgtatc 89
||||||||||||
Sbjct: 75 tagttttgtatc 86
>RF00708;mir-450;ABRO01450845.1/1386-1298 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 63.9 bits (32), Expect = 3e-10
Identities = 76/88 (86%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 5 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaa 64
||||||||||||| ||||||||||||||||| |||||||| | | | ||| || ||||||
Sbjct: 1 gaaagatgctaaa-tatttttgcgatgtgttactaatatgcactttgaatatactgggaa 59
Query: 65 cattttgcattcatagttttgtatcaat 92
||||| |||| | | |||||||||||||
Sbjct: 60 catttcgcatgc-ttgttttgtatcaat 86
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 55 gtattgggaacattttgcattcatagttttgtatcaat 92
|||||||||||||||||||| |||| ||||||||||||
Sbjct: 52 gtattgggaacattttgcatgcataattttgtatcaat 89
>RF00708;mir-450;AABR04140564.1/3502-3412 10116:Rattus norvegicus
(Norway rat)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 21 tttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacattttgcattcatag 80
||||||||||||||||||||| ||| | || | ||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcataaatag 76
Query: 81 tttt 84
||||
Sbjct: 77 tttt 80
