miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 89.7 bits (45), Expect = 5e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 11 ctcggatgggtataatacaacctgctaagtgtactaccacttatcacgttgtattat 67
||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtactaccacttaccaggttgtattat 58
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 10 actcggatgggtataatacaacctgctaagtgtactaccacttatcacgttgtattatca 69
|||||| ||| |||||||||||||||||||||| ||| |||||| || ||||||||||||
Sbjct: 1 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 60
Query: 70 ttgaccgag 78
||| |||||
Sbjct: 61 ttgtccgag 69
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 75.8 bits (38), Expect = 8e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 ctcggatgggtataatacaacctgctaagtgtactaccacttatcacgttgtattatcat 70
|||||||| |||||||||||||||||||||| ||| ||||||||| | |||||||||||
Sbjct: 2 ctcggatgaatataatacaacctgctaagtgtcctagcacttatcaggctgtattatcat 61
Query: 71 tg 72
||
Sbjct: 62 tg 63
