miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
trichocarpa
Length = 119
Score = 131 bits (66), Expect = 2e-30
Identities = 92/101 (91%), Gaps = 6/101 (5%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgacgactcgcttttgcttttgcttccatcaatataggcata 60
|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct: 12 cagccaaggatgacttgccgacgactcgtttttgcttt------catcaatatacgcata 65
Query: 61 atcaagaagagatgaatccgttggcaggttgttcttggcta 101
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 66 attaagaagagatgaatccgttggcaggttgttcttggcta 106
>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
trichocarpa
Length = 108
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgacgactc 27
|||||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgacgactc 38
>RF00645;MIR169_2;AM422776.1/2510-2609 4151:Antirrhinum majus
(snapdragon)
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgacga 24
|||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccgacga 37
>RF00645;MIR169_2;AARH01000003.1/78094-77924 3694:Populus
trichocarpa
Length = 171
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgac 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgac 33
>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
(castor bean)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgac 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgac 33
>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
(castor bean)
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgac 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgac 33
>RF00645;MIR169_2;CAAP02000269.1/151468-151586 29760:Vitis
vinifera
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgac 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgac 33
