miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 688 bits (347), Expect = 0.0
Identities = 397/413 (96%), Gaps = 6/413 (1%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatgaacgtgttactctcatttatatatatat----t 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 14 tgaagctgccagcatgatctggtaatgaacgtgttactctcatttatatatatatatatt 73
Query: 57 aacattaatcttatagcagtatctgtaggtagaaaaaatttaatgttgtcaaagatatat 116
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 74 aacattaatcatatagcagtatttgtaggtagaaaaaatttaatgttgtcaaagatatat 133
Query: 117 actgaatcgtggttgctaggtttgtattactagtttaggatgcatgtttttgatcttatg 176
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 134 actgaatcgtggtagctaggtttgtattactagtttaggatgcaagtttttgatcttatg 193
Query: 177 atgatcaattgcttgtgagttcctaggcaatgaaaacagaatatatactggtgatttttc 236
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 194 atgatcaattgcttgtgagttctttggcaatgaaaacagaatat--actggtgatttttc 251
Query: 237 ccagtaaaattgtcgagaaaagggaattgcactaatagggaagacgcataggtaaacttg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccagtaaaattgtcgagaaaagggaattgcactaatagggaagacgcataggtaaacttg 311
Query: 297 tatctaaatggtatatgtatnttccaggcaaaagggtagaaacctaatnagaaactagct 356
|| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 312 tacctaaatggtatatgtattttccaggcaaaagggtagaaacctaattagaaactagct 371
Query: 357 tgaactcagagctataaaagtatatggttccatcaggtcatctagcagcttca 409
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 372 tgaactcagagctataaaagtatatggttccatcaggtcatcttgcagcttca 424
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 89.7 bits (45), Expect = 3e-17
Identities = 92/108 (85%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 306 ggtatatgtatnttccaggcaaaagggtagaaacctaatnagaa----actagcttgaac 361
|||||| |||| ||||||| ||||||||||||| |||| |||| ||||||||||||
Sbjct: 316 ggtatacgtattttccaggaaaaagggtagaaaaataattagaattaaactagcttgaac 375
Query: 362 tcagagctataaaagtatatggttccatcaggtcatctagcagcttca 409
| ||| || || || ||||||||||||||||||||||| |||||||||
Sbjct: 376 ttagacctgtataaatatatggttccatcaggtcatcttgcagcttca 423
Score = 79.8 bits (40), Expect = 3e-14
Identities = 63/70 (90%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatgaacgtgttactctcatttatatatatattaaca 60
|||||||||||||||||||||||||||||| | |||||| |||||| |||||| ||||
Sbjct: 14 tgaagctgccagcatgatctggtaatgaacctattactc---tttatacatatatcaaca 70
Query: 61 ttaatcttat 70
||||||||||
Sbjct: 71 ttaatcttat 80
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 60.0 bits (30), Expect = 3e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatgaac 30
||||||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaatgaac 43
Score = 46.1 bits (23), Expect = 4e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 383 gttccatcaggtcatctagcagcttca 409
||||||||||||||||| |||||||||
Sbjct: 305 gttccatcaggtcatcttgcagcttca 331
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 52.0 bits (26), Expect = 6e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaat 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 52.0 bits (26), Expect = 6e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaat 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 52.0 bits (26), Expect = 6e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaat 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 52.0 bits (26), Expect = 6e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaat 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
Score = 50.1 bits (25), Expect = 3e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 381 tggttccatcaggtcatctagcagcttca 409
||||||||||||||||||| |||||||||
Sbjct: 114 tggttccatcaggtcatcttgcagcttca 142
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 48.1 bits (24), Expect = 1e-04
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatga 28
||||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctggttatga 41
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
