miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 204 bits (103), Expect = 2e-52
Identities = 121/127 (95%)
Strand = Plus / Plus
Query: 1 gcaagcggcggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttc 60
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcaaggggcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggttttc 61
Query: 61 agaccatacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 120
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
Query: 121 ctttgcc 127
|||||||
Sbjct: 122 ctttgcc 128
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 168 bits (85), Expect = 1e-41
Identities = 106/113 (93%)
Strand = Plus / Plus
Query: 15 caagctagaggcagcaactgcatatcttgcaagaaaattggttttcagaccatacctatg 74
|||||||||| ||||||||||||||||||||||||||| |||||| | ||||||| |||
Sbjct: 16 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 75
Query: 75 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 76 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 74 gattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 120
|||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 54 gattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 135 bits (68), Expect = 2e-31
Identities = 104/115 (90%), Gaps = 2/115 (1%)
Strand = Plus / Plus
Query: 15 caagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcagaccataccta 72
|||||||||||||||||||||||| |||||||||||| | |||||| | |||| |
Sbjct: 16 caagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccga 75
Query: 73 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 76 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 117
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 93.7 bits (47), Expect = 5e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 85.7 bits (43), Expect = 1e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 70 ctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 120
|||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 108 ctatgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
|||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 117
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 65 catacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 120
|||||| ||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 15 caagctagaggcagcaactgcatatcttgcaagaa 49
|||||| ||||||||||||||||| ||||||||||
Sbjct: 114 caagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 83 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 15 caagctagaggcagcaactgcatatcttgc 44
|||||| ||||||||||||||||| |||||
Sbjct: 119 caagcttgaggcagcaactgcataacttgc 90
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 79 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
||||||||||| |||||||| || ||||||||| |||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 16 aagctagaggcagcaactgcatatcttgcaaga 48
||||| ||||||||||||||||| |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaaga 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 91 tgcagttgttgtctcaagcttgctgcc 117
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
