miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 71.9 bits (36), Expect = 1e-11
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 397 tctttctctgagcttggactgaagggagctccttctttct 436
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 148 tctttctctgtgcttggactgaagggagctccttctttct 187
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 63.9 bits (32), Expect = 3e-09
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 394 ccctctttctctgagcttggactgaagggagctccttctttctgttgc 441
|||||||| |||| |||||||||||||||||||||||| |||| ||||
Sbjct: 157 ccctctttttctgtgcttggactgaagggagctccttccttctattgc 204
>RF00638;MIR159;AP006665.1/46415-46593 34305:Lotus japonicus
Length = 179
Score = 63.9 bits (32), Expect = 3e-09
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 410 ttggactgaagggagctccttctttctgttgc 441
||||||||||||||||||||||||||||||||
Sbjct: 148 ttggactgaagggagctccttctttctgttgc 179
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 61.9 bits (31), Expect = 1e-08
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 394 ccctctttctctgagcttggactgaagggagctccttctttct 436
|||||||| || | |||||||||||||||||||||||||||||
Sbjct: 156 ccctctttttccgtgcttggactgaagggagctccttctttct 198
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 54.0 bits (27), Expect = 3e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 396 ctctttctctgagcttggactgaagggagctccttcttt 434
|||||| |||| | |||||||||||||||||||||||||
Sbjct: 156 ctctttatctgtgtttggactgaagggagctccttcttt 194
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 54.0 bits (27), Expect = 3e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 403 tctgagcttggactgaagggagctccttctttctgttgc 441
|||| |||||||||||||||||||||||| |||| ||||
Sbjct: 168 tctgtgcttggactgaagggagctccttccttctcttgc 206
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 52.0 bits (26), Expect = 1e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 397 tctttctctgagcttggactgaagggagctccttcttt 434
||||| |||| | |||||||||||||||||||||||||
Sbjct: 157 tctttatctgtgtttggactgaagggagctccttcttt 194
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 52.0 bits (26), Expect = 1e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 410 ttggactgaagggagctccttctttc 435
||||||||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctccttctttc 193
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 50.1 bits (25), Expect = 5e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 400 ttctctgagcttggactgaagggagctcc 428
||||||| |||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctcc 171
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 50.1 bits (25), Expect = 5e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 400 ttctctgagcttggactgaagggagctcc 428
||||||| |||||||||||||||||||||
Sbjct: 159 ttctctgtgcttggactgaagggagctcc 187
>RF00638;MIR159;ABEU01011353.1/55901-55718 145481:Physcomitrella
patens subsp. patens
Length = 184
Score = 46.1 bits (23), Expect = 7e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 409 cttggactgaagggagctccttctttc 435
||||||||||||||||||||| |||||
Sbjct: 152 cttggactgaagggagctcctcctttc 178
