miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 83.8 bits (42), Expect = 4e-16
Identities = 85/96 (88%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
|||||||||||||||||||||||||||||||||| || |||| ||||||| || | |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgg--gaatttggtgtgaaa-aatcacag 57
Query: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
|| ||||||||||||||||||||||||||||||||
Sbjct: 58 aa--catgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctgg 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgg 34
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatctcttcctg 33
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 64 gcatgaatcgatcgataaacctctgcatccagc 96
|||||||| ||||||||||||||||||||||||
Sbjct: 56 gcatgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 46
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccagc 96
|||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatc 25
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctg 33
||||||| |||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccagc 96
|||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatccagc 96
||||||||| ||||||||||||||||||||||
Sbjct: 59 catgaatcggtcgataaacctctgcatccagc 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctg 33
||||||| |||||||||||||||||| ||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctg 33
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 80/94 (85%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataaaa 62
||||||||||||||| ||||||||||| ||| | ||||| || |||||||| |||||
Sbjct: 3 ctggaggcagcggttgatcgatctctttgtggga-atttt--tgaaaaacaaaattaaaa 59
Query: 63 cgcatgaatcgatcgataaacctctgcatccagc 96
||||||| ||||||||||||| ||||||||||
Sbjct: 60 -gcatgaacagatcgataaacctgtgcatccagc 92
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||| |||||||||||||
Sbjct: 82 aacgcaggaatcgatcgataagcctctgcatccag 116
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccagc 96
|||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
