miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 309 bits (156), Expect = 6e-84
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggcttttctatttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggcttttctatttct 60
Query: 61 aatgatttccaggcggcgaaaagttattggtcaagattagatggaaagtgaattggatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgatttccaggcggcgaaaagttattggtcaagattagatggaaagtgaattggatcc 120
Query: 121 cgccttgcatcaactgaatcgaagaccggggtgaag 156
||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgccttgcatcaactgaatcgaagaccggggtgaag 156
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 89.7 bits (45), Expect = 1e-17
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgattggct 49
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tcccgccttgcatcaactgaatc 140
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 89.7 bits (45), Expect = 1e-17
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
Score = 81.8 bits (41), Expect = 3e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 104 gaaagtgaattggatcccgccttgcatcaactgaatcgaagaccggggtgaag 156
||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 103 gaaagagaattggatcccgccttgcatcaactgaatcggagaccgcggtgaag 155
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 81.8 bits (41), Expect = 3e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcagattcgcttggtgcaggtcgggaactgattggct 49
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 81.8 bits (41), Expect = 3e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggct 49
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 45
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtgaag 156
|||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct: 133 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaag 179
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtgaa 155
|||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 30 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 75
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattg 46
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattg 46
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 115 ggatcccgccttgcatcaactgaatcgaagaccggggtgaa 155
||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggaggccgaggtgaa 135
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtttcggattcgcttggtgcaggtcgggaactgattggct 49
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 122 gccttgcatcaactgaatcgaagaccggggtgaa 155
|||||||||||||||||||| || ||| ||||||
Sbjct: 92 gccttgcatcaactgaatcggagtccgaggtgaa 125
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 108 gtgaattggatcccgccttgcatcaactgaatcgaagaccggggtgaa 155
|||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 73 gtgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 120
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgattggct 49
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcg 122
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgattggct 49
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 118 tcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcg 121
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactgaatcg 122
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaactgattggct 49
||||||||||||||||||||||||| |||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactaattggct 49
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 116 gatcccgccttgcatcaactgaatcgaagac 146
|||||||||||||||||||||||||| ||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggagac 137
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcg 122
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaact 41
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactgaatcg 123
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcg 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactgaatcg 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 116 gatcccgccttgcatcaactgaatc 140
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||| ||||||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactgaatcg 119
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcggga 38
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
|||||||||||||||||||||| |||||||
Sbjct: 91 attggatcccgccttgcatcaaatgaatcg 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ctctaattcgcttggtgcaggtcgggaac 40
|||| ||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaac 40
