miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 238 bits (120), Expect = 1e-62
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 10 agaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaacagaaaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaacagaaaa 60
Query: 70 catctgttttggctctacccctgcactgcctcttccctggcttccggttcttctttttgt 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catctgttttggctctacccctgcactgcctcttccctggcttccggttcttctttttgt 120
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 97.6 bits (49), Expect = 3e-20
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 16 agacagacaaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctg 75
||||||| ||||| |||||||||||| |||||||||| ||||||||||||| | ||
Sbjct: 7 agacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtact-tg 65
Query: 76 ttttggctctacccctgcactgcctcttccctggctt 112
|||||||||||||| ||||||||||||||||||||||
Sbjct: 66 ttttggctctacccatgcactgcctcttccctggctt 102
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 76 ttttggctctacccctgcactgcctcttccctggct 111
|||||| |||||||||||||||||||||||||||||
Sbjct: 71 ttttggttctacccctgcactgcctcttccctggct 106
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 73 ctgttttggctctacccctgcactgcctcttccctggct 111
||||||| ||||||||| |||||||||||||||||||||
Sbjct: 70 ctgtttttgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 ttttggctctacccctgcactgcctcttccctggct 111
||||| |||||||| |||||||||||||||||||||
Sbjct: 73 ttttgtctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 74 tgttttggctctacccctgcactgcctcttccctggc 110
|||| ||||||||| | ||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 139 cccctgcactgcctcttccctggct 163
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 150 cccctgcactgcctcttccctggct 174
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 141 cccctgcactgcctcttccctggct 165
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 139 cccctgcactgcctcttccctggct 163
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 73 ctgttttggctctacccctgcactgcctcttccctggctt 112
||||| |||||| || | ||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggctt 106
