miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;AASG02028037.1/959-864 3988:Ricinus communis
(castor bean)
Length = 96
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 catcatttgttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catcatttgttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatggtt 60
Query: 61 gcacaccagcgtgctccctatcgttgtcaat 91
|||||||||||||||||||||||||||||||
Sbjct: 61 gcacaccagcgtgctccctatcgttgtcaat 91
>RF00714;MIR535;CAAP02013010.1/2187-2087 29760:Vitis vinifera
Length = 101
Score = 63.9 bits (32), Expect = 3e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatg 57
||||||||||||||||||| |||||| ||| ||||||| |||||||||
Sbjct: 10 ttgacaacgagagagagcatgcttgtcagcattcatgtgaggaacatg 57
>RF00714;MIR535;CAAP02011100.1/4619-4518 29760:Vitis vinifera
Length = 102
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaagg 51
||||||| |||||||||||| ||||||||| |||||||||||
Sbjct: 10 ttgacaaagagagagagcacacttgttagcattcatgtaagg 51
>RF00714;MIR535;ABIM01002931.1/4831-4931 3649:Carica papaya
(papaya)
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgcttgtta 37
|||||||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgcttgtta 37
>RF00714;MIR535;ABEU01009956.1/139970-139869 145481:Physcomitrella
patens subsp. patens
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>RF00714;MIR535;ABEU01004601.1/20377-20277 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>RF00714;MIR535;ABEU01006897.1/4394-4494 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
