miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 264 bits (133), Expect = 6e-70
Identities = 221/246 (89%), Gaps = 7/246 (2%)
Strand = Plus / Plus
Query: 11 ggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgct 70
||||| |||||| |||||||||||||||||||||||||| || | | |||||||||||||
Sbjct: 1 ggattcgaagcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgct 60
Query: 71 gctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtattttcggaga 130
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 61 gctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtactct---aga 117
Query: 131 gggaggagaggagctagactctcacggtggtc-gtctttgagataggcttgtggtttgca 189
||| ||| || ||| || ||| ||| |||||||||||||||||||||||||||
Sbjct: 118 gggccc-gagaag--agattcatgtggtcgtcagtctttgagataggcttgtggtttgca 174
Query: 190 tgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 234
Query: 250 tcctga 255
||||||
Sbjct: 235 tcctga 240
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 180 bits (91), Expect = 7e-45
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 161 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 220
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 135 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 194
Query: 221 ccgctctttggattgaagggagctctgcatcctga 255
|||||||||||||||||||||||||||||||||||
Sbjct: 195 ccgctctttggattgaagggagctctgcatcctga 229
Score = 141 bits (71), Expect = 6e-33
Identities = 90/95 (94%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 14 tttgaagcggagctcctatcattccaatgaagggccgttctgaagggt-ggttccgctgc 72
|||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||
Sbjct: 4 tttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgc 63
Query: 73 tcgttcatggttcccactatcctatctcatcatgt 107
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tcgttcatggttcccactatcctatctcatcatgt 98
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 99.6 bits (50), Expect = 2e-20
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 167 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 225
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 226 ctttggattgaagggagctctgcatc 251
|||||| ||||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgcatc 214
Score = 65.9 bits (33), Expect = 3e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 52 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 104
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 42 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 93.7 bits (47), Expect = 1e-18
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 167 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccc-ttgctggccgct 225
||||||| ||| ||||||||||||||||||||||||||| ||||||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 226 ctttggattgaagggagctctgc 248
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 93.7 bits (47), Expect = 1e-18
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 169 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 228
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 229 tggattgaagggagctctgcatc 251
|||||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctgcatc 179
Score = 61.9 bits (31), Expect = 4e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 52 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcat 102
||||||||||| | | |||||| |||||||||||||||||| |||||||||
Sbjct: 39 tctgaagggtgatacagctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 224 ctctttggattgaagggagctctgcatc 251
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctctgcatc 251
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctctgcatc 251
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
