miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
           (sorghum)
          Length = 198

 Score =  331 bits (167), Expect = 3e-90
 Identities = 170/171 (99%)
 Strand = Plus / Plus

                                                                       
Query: 44  aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70

                                                                       
Query: 104 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 163
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71  gatgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgac 130

                                                              
Query: 164 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 181




>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
          Length = 200

 Score =  276 bits (139), Expect = 1e-73
 Identities = 169/178 (94%), Gaps = 2/178 (1%)
 Strand = Plus / Plus

                                                                       
Query: 39  gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggt 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggt 65

                                                                       
Query: 99  tcatggatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgt 156
           |||||||| ||||||||||||||||||| |   |||||||  ||||||||||||||||||
Sbjct: 66  tcatggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgt 125

                                                                     
Query: 157 gcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 126 gcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 183




>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
          Length = 190

 Score =  125 bits (63), Expect = 3e-28
 Identities = 143/169 (84%), Gaps = 8/169 (4%)
 Strand = Plus / Plus

                                                                       
Query: 46  gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
           |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13  gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72

                                                                       
Query: 106 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 165
           | |||||   ||||    ||| |  | |||    ||||||||||||||| ||||||||||
Sbjct: 73  tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124

                                                            
Query: 166 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
           ||||||||||||||||||  |||| | ||  ||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggag 173




>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
           Japonica Group
          Length = 199

 Score = 91.7 bits (46), Expect = 4e-18
 Identities = 140/170 (82%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                       
Query: 46  gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
           ||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13  gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72

                                                                       
Query: 106 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 164
           | |||||   ||||| |  |  | |  ||    ||||||||||||||||| |||||||||
Sbjct: 73  tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132

                                                             
Query: 165 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
           |||||||||||||||||||  |||| | ||  || |||||||||||||||
Sbjct: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggag 182




>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
          Length = 191

 Score = 85.7 bits (43), Expect = 3e-16
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                       
Query: 46  gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
           ||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13  gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72

                  
Query: 106 tgcctct 112
           | |||||
Sbjct: 73  tacctct 79



 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 138 cctgcacttgcatgggtgtgcatgacccgggagatgaacc 177
           ||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 98  cctgcacttgcatgggtttgcatgacctgggagatgaacc 137




>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
          Length = 193

 Score = 85.7 bits (43), Expect = 3e-16
 Identities = 65/71 (91%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                       
Query: 43  gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 101
           ||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 10  gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69

                      
Query: 102 tggatgcctct 112
           ||||| |||||
Sbjct: 70  tggatacctct 80




>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
          Length = 208

 Score = 77.8 bits (39), Expect = 6e-14
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                       
Query: 46  gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
           ||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13  gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72

                  
Query: 106 tgcctct 112
           | |||||
Sbjct: 73  tacctct 79