miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaaa 26
||||||||||||||||||||||||||
Sbjct: 166 tcggaccaggcttcattccccccaaa 191
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaaa 26
||||||||||||||||||||||||||
Sbjct: 135 tcggaccaggcttcattccccccaaa 160
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaaa 26
||||||||||||||||||||||||||
Sbjct: 155 tcggaccaggcttcattccccccaaa 180
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaaa 26
||||||||||||||||||||||||||
Sbjct: 154 tcggaccaggcttcattccccccaaa 179
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 111 tcggaccaggcttcattccccccaa 135
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 121 tcggaccaggcttcattccccccaa 145
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 86 tcggaccaggcttcattccccccaa 110
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 97 tcggaccaggcttcattccccccaa 121
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus
trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattccccccaa 93
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus
trichocarpa
Length = 92
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 67 tcggaccaggcttcattccccccaa 91
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattccccccaa 96
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 109 tcggaccaggcttcattccccccaa 133
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattccccccaa 124
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 130 tcggaccaggcttcattccccccaa 154
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 96 tcggaccaggcttcattccccccaa 120
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 108 tcggaccaggcttcattccccccaa 132
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattccccccaa 93
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 82 tcggaccaggcttcattccccccaa 106
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 88 tcggaccaggcttcattccccccaa 112
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 123 tcggaccaggcttcattccccccaa 147
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 131 tcggaccaggcttcattccccccaa 155
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 125 tcggaccaggcttcattccccccaa 149
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 65 tcggaccaggcttcattccccccaa 89
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 79 tcggaccaggcttcattccccccaa 103
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaa 25
|||||||||||||||||||||||||
Sbjct: 87 tcggaccaggcttcattccccccaa 111
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattcccccca 24
||||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattcccccca 123
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa
subsp. pekinensis
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattcccccca 24
||||||||||||||||||||||||
Sbjct: 62 tcggaccaggcttcattcccccca 85
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattcccccca 24
||||||||||||||||||||||||
Sbjct: 79 tcggaccaggcttcattcccccca 102
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattcccccca 24
||||||||||||||||||||||||
Sbjct: 162 tcggaccaggcttcattcccccca 185
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattcccccca 24
||||||||||||||||||||||||
Sbjct: 189 tcggaccaggcttcattcccccca 212
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaaa 26
||||||||||||||||||||| ||||
Sbjct: 75 tcggaccaggcttcattcccctcaaa 100
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccc 22
||||||||||||||||||||||
Sbjct: 93 tcggaccaggcttcattccccc 114
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaaa 26
||||||||||||||||||||| ||||
Sbjct: 81 tcggaccaggcttcattcccctcaaa 106
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccc 22
||||||||||||||||||||||
Sbjct: 67 tcggaccaggcttcattccccc 88
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccccaaa 26
||||||||||||||||||||| ||||
Sbjct: 98 tcggaccaggcttcattcccctcaaa 123
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcggaccaggcttcattccccc 22
||||||||||||||||||||||
Sbjct: 80 tcggaccaggcttcattccccc 101
