miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 188 bits (95), Expect = 1e-47
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 4 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 61
Query: 64 gatcccgccttgcaccaagtgaatcggagccggcg 98
|||||||||||||||||||||||||||||||||||
Sbjct: 62 gatcccgccttgcaccaagtgaatcggagccggcg 96
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 127 bits (64), Expect = 3e-29
Identities = 94/103 (91%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 3 cgccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacggg 60
|||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||
Sbjct: 1 cgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacggg 60
Query: 61 acggatcccgccttgcaccaagtgaatcggagccggcgcagcc 103
|| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 61 acagatcccgccttgcaccaagtgaatccgagccggagcagcc 103
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 121 bits (61), Expect = 2e-27
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 8 cgccgcctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacgga 65
|||||||||||||||||||||||||||||||||||||||||| | || | | ||| ||||
Sbjct: 6 cgccgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccgga 65
Query: 66 tcccgccttgcaccaagtgaatcggagccggcg 98
|||||||||||||||||||||||||||||||||
Sbjct: 66 tcccgccttgcaccaagtgaatcggagccggcg 98
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 97 ggatcccgccttgcatcaactgaatcggagcc 128
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 94 ggatcccgccttgcatcaactgaatcggagcc 125
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 cggatcccgccttgcaccaagtgaatcggag 92
|||||||||||||||| ||| ||||||||||
Sbjct: 94 cggatcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 64 gatcccgccttgcaccaagtgaatcggagccggcg 98
|||||||||||||| ||| |||||||||| |||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggagacggcg 141
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 35 ggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 94 ggatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcggag 167
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 114 ggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 80 ggatcccgccttgcatcaactgaatcggag 109
