miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 341 bits (172), Expect = 2e-93
Identities = 175/176 (99%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70
Query: 61 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71 gatgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgac 130
Query: 121 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 186
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 276 bits (139), Expect = 1e-73
Identities = 169/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70
Query: 61 gatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatg 118
||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 71 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 130
Query: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 188
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 131 bits (66), Expect = 4e-30
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 63 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 122
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
Query: 123 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 174
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 99.6 bits (50), Expect = 1e-20
Identities = 144/174 (82%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 63 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 121
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
Query: 122 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 175
||||||||||||||||||| |||| | || || |||||||||||||||||||
Sbjct: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 85.7 bits (43), Expect = 2e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 63 tgcctct 69
| |||||
Sbjct: 73 tacctct 79
Score = 65.9 bits (33), Expect = 2e-10
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 95 cctgcacttgcatgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgt 154
||||||||||||||||| ||||||||| |||||||||||| |||| | || | || |
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacctgccattgtgttcctctatt 157
Query: 155 gcttggattgaagggagctcc 175
| |||||||||||||||||||
Sbjct: 158 gattggattgaagggagctcc 178
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 83.8 bits (42), Expect = 7e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 aagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 59
|||||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct: 11 aagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcat 70
Query: 60 ggatgcctct 69
|||| |||||
Sbjct: 71 ggatacctct 80
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 77.8 bits (39), Expect = 5e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 63 tgcctct 69
| |||||
Sbjct: 73 tacctct 79
