miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaa 61
||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 14 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 59
Score = 67.9 bits (34), Expect = 5e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 158 gtgttgttgcttccacccctgcactgcctcttccctggctcc 199
||||||||||| || |||||||||||||||||||||||||||
Sbjct: 126 gtgttgttgctccctcccctgcactgcctcttccctggctcc 167
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 71.9 bits (36), Expect = 4e-12
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 10 gtttgattggagacagggacgaggcagagcatggg-atggggccatcaacaaaatt 64
||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 7 gtttgatcggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 62
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 160 gttgttgcttccacccctgcactgcctcttccctggctccccaccgt 206
||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcctcaccgt 172
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 71.9 bits (36), Expect = 4e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaat 63
||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 14 ttggagacagggatgagacagagaatgggatggggccatcaacaaaat 61
Score = 67.9 bits (34), Expect = 5e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 158 gtgttgttgcttccacccctgcactgcctcttccctggctcc 199
||||||||||| || |||||||||||||||||||||||||||
Sbjct: 135 gtgttgttgctccctcccctgcactgcctcttccctggctcc 176
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 159 tgttgttgcttccacccctgcactgcctcttccctggctcccc 201
|||||||||| || |||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcccc 167
Score = 67.9 bits (34), Expect = 5e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 18 ggagacagggacgaggcagagcatgggatggggccatcaaca 59
||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 15 ggagacagggatgaggcagagcatgggatggggctatcaaca 56
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 159 tgttgttgcttccacccctgcactgcctcttccctggctc 198
|||| ||| ||| |||||||||||||||||||||||||||
Sbjct: 68 tgtttttggttctacccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggct 197
||||||||||||||||||||||||||
Sbjct: 77 acccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggctccc 200
|||| ||||||||||||||||||||||||
Sbjct: 83 acccatgcactgcctcttccctggctccc 111
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggctc 198
|||| ||||||||||||||||||||||
Sbjct: 83 acccatgcactgcctcttccctggctc 109
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggct 197
|||| |||||||||||||||||||||
Sbjct: 76 acccatgcactgcctcttccctggct 101
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 177 tgcactgcctcttccctggctc 198
||||||||||||||||||||||
Sbjct: 119 tgcactgcctcttccctggctc 140
