miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 75.8 bits (38), Expect = 3e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
|||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 14 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 59
Score = 50.1 bits (25), Expect = 2e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 227 tgttgttgcttacttccctgcactgactcttccctggctcc 267
|||||||||| || |||||||||| |||||||||||||||
Sbjct: 127 tgttgttgctccctcccctgcactgcctcttccctggctcc 167
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 71.9 bits (36), Expect = 5e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaat 63
||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 14 ttggagacagggatgagacagagaatgggatggggccatcaacaaaat 61
Score = 50.1 bits (25), Expect = 2e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 227 tgttgttgcttacttccctgcactgactcttccctggctcc 267
|||||||||| || |||||||||| |||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcc 176
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 67.9 bits (34), Expect = 7e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatgaggccatcaaca 59
|||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 15 ggagacagggatgaggcagagcatgggatggggctatcaaca 56
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 227 tgttgttgcttacttccctgcactgactcttccctggctcccc 269
|||||||||| || |||||||||| |||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcccc 167
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 54.0 bits (27), Expect = 1e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 228 gttgttgcttacttccctgcactgactcttccctggctccccaccgt 274
||||||||| || |||||||||| ||||||||||||||| ||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcctcaccgt 172
Score = 48.1 bits (24), Expect = 7e-05
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatggg-atgaggccatcaacaaaatt 64
||||||||||| ||||||||||||||| | | ||||||||||| ||||
Sbjct: 15 ggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 62
