miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
          (Japanese medaka)
          Length = 89

 Score =  141 bits (71), Expect = 2e-33
 Identities = 80/83 (96%)
 Strand = Plus / Minus

                                                                      
Query: 1  tcacgacgcagtagctggttgaaggggaccaaacctcgcagaaacacctgacttggttcc 60
          ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 85 tcacgacgcagtagctggttgaaggggaccaaacctctctgaaacacctgacttggttcc 26

                                 
Query: 61 atttgaccagccacagcaaggcg 83
           ||||||||||||||||||||||
Sbjct: 25 gtttgaccagccacagcaaggcg 3




>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 89

 Score =  133 bits (67), Expect = 4e-31
 Identities = 79/83 (95%)
 Strand = Plus / Minus

                                                                      
Query: 1  tcacgacgcagtagctggttgaaggggaccaaacctcgcagaaacacctgacttggttcc 60
          ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 85 tcacggcgcagtagctggttgaaggggaccaaacctcacagaaacacctgacttggttcc 26

                                 
Query: 61 atttgaccagccacagcaaggcg 83
           ||||||||||||| ||||||||
Sbjct: 25 gtttgaccagccacggcaaggcg 3




>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
          (zebrafish)
          Length = 85

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                      
Query: 1  tcacgacgcagtagctggttgaaggggaccaaacctcgcagaaacacctgacttggttcc 60
          ||||| ||||||||||||||||| ||||||||||||| |  ||||||| |||||||||||
Sbjct: 83 tcacggcgcagtagctggttgaaagggaccaaacctctcgcaaacacccgacttggttcc 24

                     
Query: 61 atttgaccagc 71
           ||| ||||||
Sbjct: 23 gttttaccagc 13




>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
          (cape rock hyrax)
          Length = 88

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 61/68 (89%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                      
Query: 11 gtagctggttgaaggggaccaaacctcgcagaaacacctgacttggttccatttgaccag 70
          ||||||||||||||||||||||||||| ||| || | | ||||||||||| |||||||||
Sbjct: 74 gtagctggttgaaggggaccaaacctctcaggaaga-cggacttggttccgtttgaccag 16

                  
Query: 71 ccacagca 78
          ||| ||||
Sbjct: 15 ccagagca 8




>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 12 tagctggttgaaggggaccaaacctc 37
          ||||||||||||||||||||||||||
Sbjct: 73 tagctggttgaaggggaccaaacctc 48




>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
          Length = 81

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                   
Query: 11 gtagctggttgaaggggaccaaacc 35
          |||||||||||||||||||||||||
Sbjct: 69 gtagctggttgaaggggaccaaacc 45




>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
          intestinalis
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                      
Query: 8  gcagtagctggttgaaggggaccaaacc 35
          |||| |||||||||||||||||||||||
Sbjct: 81 gcagcagctggttgaaggggaccaaacc 54




>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
          carolinensis (green anole)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 11 gtagctggttgaaggggaccaaacct 36
          |||||||||| |||||||||||||||
Sbjct: 74 gtagctggttaaaggggaccaaacct 49