miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AM467681.2/20491-20605 29760:Vitis vinifera
Length = 115
Score = 224 bits (113), Expect = 2e-58
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1 atgaattgctgggcaatactccattggcagttggccactcggctgaccgcggttgacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 atgaattgctgggcaatactccattggcagttggccactcggctgaccgcggttgacttc 62
Query: 61 acaagtagcagactaagctcactgccaaaggagatttgcccctcaattcagct 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 acaagtagcagactaagctcactgccaaaggagatttgcccctcaattcagct 115
>RF00445;mir-399;AM470981.2/5848-5733 29760:Vitis vinifera
Length = 116
Score = 129 bits (65), Expect = 8e-30
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 9 ctgggcaat-actccattggcagttggccactcggctgaccgcggttgacttcacaagta 67
||||||||| |||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 11 ctgggcaattactccattggcagttggccactcggctgaccgtgattaacttcacaagtt 70
Query: 68 gcagactaagctcactgccaaaggagatttgcccc 102
|||| |||||||||||||||||||||||||||||
Sbjct: 71 scagagtaagctcactgccaaaggagatttgcccc 105
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 76 agctcactgccaaaggagatttgcccctcaattcagc 112
||||||||||||||||||||||||||| |||||||||
Sbjct: 99 agctcactgccaaaggagatttgccccgcaattcagc 135
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 76 agctcactgccaaaggagatttgcccctcaattcagc 112
||||||||||||||||||||||||||| |||||||||
Sbjct: 100 agctcactgccaaaggagatttgccccgcaattcagc 136
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 76 agctcactgccaaaggagatttgcccctcaattcagc 112
||||||||||||||||||||||||||| |||||||||
Sbjct: 100 agctcactgccaaaggagatttgccccgcaattcagc 136
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 76 agctcactgccaaaggagatttgcccctcaattcagc 112
||||||||||||||||||||||||||| |||||||||
Sbjct: 82 agctcactgccaaaggagatttgccccgcaattcagc 118
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 74 taagctcactgccaaaggagatttgcccctcaattca 110
||||||||||||||||||||||||||||| |||||||
Sbjct: 69 taagctcactgccaaaggagatttgccccgcaattca 105
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 74 taagctcactgccaaaggagatttgcccctcaattca 110
||||||| ||||||||||||||||||||| |||||||
Sbjct: 82 taagctcgctgccaaaggagatttgccccgcaattca 118
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 77 gctcactgccaaaggagatttgcccctcaattca 110
||||||||||||||||||||||||| |||||||
Sbjct: 73 gctcactgccaaaggagatttgcccggcaattca 106
>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 77 gctcactgccaaaggagatttgcccctcaattca 110
|||||||||||||| ||||||||||| |||||||
Sbjct: 79 gctcactgccaaagaagatttgccccgcaattca 112
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccctcaattca 110
||||||||||||||||||||| |||||||
Sbjct: 69 ctgccaaaggagatttgccccgcaattca 97
>RF00445;mir-399;AARH01014736.1/14382-14268 3694:Populus trichocarpa
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 gctcactgccaaaggagatttgcccctcaattc 109
|||||||||||||| ||||||||||| ||||||
Sbjct: 79 gctcactgccaaagaagatttgccccgcaattc 111
>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
(castor bean)
Length = 117
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 78 ctcactgccaaaggagatttgcccctcaattca 110
||||||||||||| ||||||||||| |||||||
Sbjct: 82 ctcactgccaaagaagatttgccccgcaattca 114
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 agctcactgccaaaggagatttgccc 101
||||| ||||||||||||||||||||
Sbjct: 81 agctctctgccaaaggagatttgccc 106
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 cactgccaaaggagatttgccc 101
||||||||||||||||||||||
Sbjct: 74 cactgccaaaggagatttgccc 95
