miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 196 bits (99), Expect = 4e-50
Identities = 111/115 (96%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgtgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgcgatctgtcc 115
||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 61 taatcaccgggcgattcgacgccgttagattcacgcacaaactcgtgatcagtcc 115
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 83 cgttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||||||||||||||
Sbjct: 67 cgttagattcacgcacaaactcgcgatctgtc 98
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 77 gttagattcacgcacaaactcgtgatctgtc 107
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatct 111
|||||||||||||||||||||| |||||
Sbjct: 74 gttagattcacgcacaaactcgtgatct 101
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 69 ttagattcacgcacaaactcgtaatctgtc 98
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 88 ttagattcacgcacaaactcgtaatctgtc 117
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 101 ttagattcacgcacaaactcgtaatctgtc 130
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtc 107
