miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctatgtcctttgtttacaaaggatcagaattgtggacctttgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgtttacaaaggatcagaattgtggacctttgt 60
Query: 62 gttggttcgtaggcagtctccttggct 88
|||||||||||||||||||||||||||
Sbjct: 61 gttggttcgtaggcagtctccttggct 87
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 105 bits (53), Expect = 9e-23
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcctttgtttacaaaggatcagaattgtggacctttg 60
|||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||
Sbjct: 107 tagccaaggatgacttgcctatgtcctttg-tcccaaaggatcagaa-tgtgaacctttg 50
Query: 61 tgttggttcgtaggcagtctccttggcta 89
|||||||| |||||||||||||||||||
Sbjct: 49 agttggttcataggcagtctccttggcta 21
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 103 bits (52), Expect = 4e-22
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctatgtcctttgtttacaaaggatcagaattgtggacctttgt 61
||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttg-tcccaaaggatcagaa-tgtgaacctttga 58
Query: 62 gttggttcgtaggcagtctccttggcta 89
|||||||| |||||||||||||||||||
Sbjct: 59 gttggttcataggcagtctccttggcta 86
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 56.0 bits (28), Expect = 8e-08
Identities = 78/93 (83%), Gaps = 5/93 (5%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcctttgtttacaaaggatcagaattgtggacctttg 60
|||||||||||||||||||| ||||||||| | | ||||||||||| |||| ||||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcctttg-tgccgaaggatcagaaatgtgagcctttg 68
Query: 61 ----tgttggttcgtaggcagtctccttggcta 89
| |||||| |||||||||||||||||||
Sbjct: 69 agatagatggttcataggcagtctccttggcta 101
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcctt 28
|||||||||||||||||||| |||||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcctt 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 64 tggttcgtaggcagtctccttggcta 89
|||||| |||||||||||||||||||
Sbjct: 46 tggttcataggcagtctccttggcta 21
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcctt 28
|||||||||||||||||||| |||||||
Sbjct: 121 tagccaaggatgacttgcctgtgtcctt 94
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcctt 28
|||||||||||||||||||| |||||||
Sbjct: 14 tagccaaggatgacttgcctgtgtcctt 41
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 64 tggttcgtaggcagtctccttggcta 89
|||||| |||||||||||||||||||
Sbjct: 76 tggttcataggcagtctccttggcta 101
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcctt 28
|||||||||||||||||||| |||||||
Sbjct: 9 tagccaaggatgacttgcctgtgtcctt 36
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 121 tagccaaggatgacttgcctatttcct 95
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 132 tagccaaggatgacttgcctatttcct 106
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 ttcgtaggcagtctccttggcta 89
|||||||||||||||||||||||
Sbjct: 43 ttcgtaggcagtctccttggcta 21
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 107 tagccaaggatgacttgcctatatcct 81
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 109 tagccaaggatgacttgcctatatcct 83
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||| ||||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcct 82
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 16 tagccaaggatgacttgcctatttcct 42
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ttcgtaggcagtctccttggcta 89
|||||||||||||||||||||||
Sbjct: 102 ttcgtaggcagtctccttggcta 124
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 13 tagccaaggatgacttgcctatttcct 39
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 9 tagccaaggatgacttgcctatatcct 35
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||||| ||||
Sbjct: 9 tagccaaggatgacttgcctatatcct 35
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtcct 27
|||||||||||||||||||| ||||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcct 36
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 125 tagccaaggatgacttgcctat 104
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctat 35
