miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
(sorghum)
Length = 142
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 117 tgttatgtagccaaggatgacttgccgg 144
||||||||||||||||||||||||||||
Sbjct: 5 tgttatgtagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
(papaya)
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 tgtagccaaggatgacttgccgg 144
|||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AAAA02007387.1/24033-23898 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 tgtagccaaggatgacttgccgg 144
|||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AP008208.1/31224491-31224356 39947:Oryza sativa
Japonica Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 tgtagccaaggatgacttgccgg 144
|||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccgg 32
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum bicolor
(sorghum)
Length = 74
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 gtagccaaggatgacttgccgg 144
||||||||||||||||||||||
Sbjct: 55 gtagccaaggatgacttgccgg 34
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 gtagccaaggatgacttgccgg 144
||||||||||||||||||||||
Sbjct: 10 gtagccaaggatgacttgccgg 31
