miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01004262.1/367-494 3694:Populus trichocarpa
Length = 128
Score = 168 bits (85), Expect = 2e-41
Identities = 121/131 (92%), Gaps = 4/131 (3%)
Strand = Plus / Minus
Query: 29 agataagagcttgtt-ggtagccaaggacgacttgtccgccaccatcttagttgggtcca 87
|||||||||| |||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 128 agataagagcctgtttggtagccaaggacgacttgcccaccaccatcttagttgggtcca 69
Query: 88 gtataatattactgggcaccttccatttggttttgggcaagcaccttggctaattgacaa 147
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 68 gtata---ttactgggcaccttccatttggttttgggcaagcaccttggctagctgacaa 12
Query: 148 gctcttatcaa 158
||||||||||
Sbjct: 11 actcttatcaa 1
>RF00645;MIR169_2;AARH01004261.1/78455-78341 3694:Populus
trichocarpa
Length = 115
Score = 145 bits (73), Expect = 2e-34
Identities = 102/111 (91%), Gaps = 3/111 (2%)
Strand = Plus / Plus
Query: 42 ttggtagccaaggacgacttgtccgccaccatcttagttgggtccagtataatattactg 101
||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||
Sbjct: 8 ttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatata---ttactg 64
Query: 102 ggcaccttccatttggttttgggcaagcaccttggctaattgacaagctct 152
|||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 65 ggcaccttccatttggttttgggcaagcaccttggctagctgacaaactct 115
>RF00865;MIR169_5;AARH01002590.1/191263-191135 3694:Populus
trichocarpa
Length = 129
Score = 46.1 bits (23), Expect = 2e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 29 agataagag-cttgttggtagccaaggacgacttg 62
||||||||| |||||| ||||||||||||||||||
Sbjct: 129 agataagagtcttgtttgtagccaaggacgacttg 95
