miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00028;Intron_gpI;DQ678050.1/509-1066 93487:Capnodium salicinum
Length = 558
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 51 cccgtcttgaaacacggaccaaggagtctaacat 84
||||||||||||||||||||||||||||||||||
Sbjct: 20 cccgtcttgaaacacggaccaaggagtctaacat 53
>RF01960;SSU_rRNA_eukarya;AY988500.1/1-1510 109870:Asterophlyctis
sarcoptoides
Length = 1510
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 48 cgacccgtcttgaaacacggaccaaggagtctaaca 83
||||||||||||||||||||||||||||||| ||||
Sbjct: 1335 cgacccgtcttgaaacacggaccaaggagtccaaca 1370
>RF01960;SSU_rRNA_eukarya;AY988506.1/1-1565 329046:Rhizoclosmatium
globosum
Length = 1565
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 cgacccgtcttgaaacacggaccaaggagt 77
||||||||||||||||||||||||||||||
Sbjct: 1326 cgacccgtcttgaaacacggaccaaggagt 1355
>RF01960;SSU_rRNA_eukarya;AY988504.1/1-1569 110081:Obelidium
mucronatum
Length = 1569
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 cgacccgtcttgaaacacggaccaaggagt 77
||||||||||||||||||||||||||||||
Sbjct: 1330 cgacccgtcttgaaacacggaccaaggagt 1359
>RF01960;SSU_rRNA_eukarya;AY988502.1/1-1541 109890:Chytriomyces
spinosus
Length = 1541
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 50 acccgtcttgaaacacggaccaaggagtctaaca 83
||||||||||||||||||||||||||||| ||||
Sbjct: 1349 acccgtcttgaaacacggaccaaggagtccaaca 1382
>RF01960;SSU_rRNA_eukarya;AY988503.1/1-1511 109932:Entophlyctis
luteolus
Length = 1511
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 cccgtcttgaaacacggaccaaggagtc 78
||||||||||||||||||||||||||||
Sbjct: 1346 cccgtcttgaaacacggaccaaggagtc 1373
