miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00005;tRNA;AABR04003731.1/2218-2146 :
Length = 73
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactg 42
||||||||||||||||||||||||||||||
Sbjct: 1 ggagagatggctcagcagttaagagcactg 30
>RF00100;7SK;CAAA01021056.1/19018-18771 10090:Mus musculus (house
mouse)
Length = 248
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 8 gggctggagagatggctcagcagttaagagcactgac 44
||||||| ||||||||||||||| |||||||||||||
Sbjct: 203 gggctggtgagatggctcagcaggtaagagcactgac 239
>RF00015;U4;AABR04001466.1/25624-25464 10116:Rattus norvegicus
(Norway rat)
Length = 161
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 8 gggctggagagatggctcagcagttaagagcactgac 44
|||||||||||||||||||| |||||||||||||||
Sbjct: 79 gggctggagagatggctcagtggttaagagcactgac 115
>RF00005;tRNA;AAHX01041629.1/25633-25698 :
Length = 66
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 gagatggctcagcagttaagagcactga 43
||||||||||||||||||||||||||||
Sbjct: 1 gagatggctcagcagttaagagcactga 28
>RF00340;SNORA36;AC124020.2/73726-73843 10090:Mus musculus (house
mouse)
Length = 118
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 gctggagagatggctcagcagttaagagcac 40
||||| |||||||||||||||||||||||||
Sbjct: 83 gctggggagatggctcagcagttaagagcac 113
>RF00100;7SK;AC160411.8/123410-123103 10090:Mus musculus (house
mouse)
Length = 308
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 7 agggctggagagatggctcagcagttaagagcactgac 44
||||||||||||||||||||| ||||||| |||||||
Sbjct: 249 agggctggagagatggctcagtggttaagaacactgac 286
>RF00005;tRNA;AAHX01091105.1/26950-27024 :
Length = 75
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcactgac 44
|||||||||||||||||||||||||
Sbjct: 10 tggctcagcagttaagagcactgac 34
>RF00005;tRNA;AAHX01050080.1/11400-11334 :
Length = 67
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 agatggctcagcagttaagagcactgac 44
||||||||||| ||||||||||||||||
Sbjct: 1 agatggctcagtagttaagagcactgac 28
>RF00005;tRNA;AABR04015772.1/30101-30162 :
Length = 62
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcact 41
||||||||||||||||||||||||
Sbjct: 1 gatggctcagcagttaagagcact 24
>RF00005;tRNA;AAHX01077052.1/11963-12029 :
Length = 67
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactgac 44
|||||||||||||||| ||||||||||||||
Sbjct: 1 ggagagatggctcagcgattaagagcactgac 32
>RF00005;tRNA;AC154566.2/36961-37027 :
Length = 67
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 agagatggctcagcagttaagagcactg 42
|||||||||||||| |||||||||||||
Sbjct: 3 agagatggctcagcggttaagagcactg 30
>RF00005;tRNA;AABR04096067.1/1552-1485 :
Length = 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcactgac 44
||||||||||| |||||||||||||||
Sbjct: 1 gatggctcagcggttaagagcactgac 27
>RF00005;tRNA;AAHX01051625.1/36361-36291 :
Length = 71
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcact 41
||||||||||||||||||||||
Sbjct: 5 tggctcagcagttaagagcact 26
>RF00005;tRNA;AC094784.13/2484-2551 :
Length = 68
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 agatggctcagcagttaagagcactg 42
|||||||||||| |||||||||||||
Sbjct: 5 agatggctcagcggttaagagcactg 30
>RF00005;tRNA;AABR04065012.1/6558-6493 :
Length = 66
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 atggctcagcagttaagagcactgac 44
|||||||||| |||||||||||||||
Sbjct: 1 atggctcagcggttaagagcactgac 26
>RF00005;tRNA;AAHY01107243.1/6262-6192 :
Length = 71
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactg 42
||||||||||||||| |||||||||||||
Sbjct: 1 ggagagatggctcagtggttaagagcactg 30
