miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 283 acttataatttgggacggagggagta 308
||||||||||||||||||||||||||
Sbjct: 52 acttataatttgggacggagggagta 77
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 283 acttataatttgggacggagggagtatga 311
||||||||||||| |||||||||||||||
Sbjct: 30 acttataatttggaacggagggagtatga 2
>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
(African rice)
Length = 110
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 282 tacttataatttgggacggagggagtat 309
|||||||| |||||||||||||||||||
Sbjct: 80 tacttatattttgggacggagggagtat 107
>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 282 tacttataatttgggacggagggagtat 309
|||||||| |||||||||||||||||||
Sbjct: 31 tacttatattttgggacggagggagtat 4
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 283 acttataatttgggacggagggagtat 309
||||||||||||| |||||||||||||
Sbjct: 30 acttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 283 acttataatttgggacggagggagtat 309
||||||||||||| |||||||||||||
Sbjct: 30 acttataatttggaacggagggagtat 4
>RF00906;MIR1122;AAAA02026282.1/2845-2975 39946:Oryza sativa Indica
Group
Length = 131
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 279 aggtacttataatttgggacggagggagtat 309
|||| |||||| |||||||||||||||||||
Sbjct: 34 aggttcttatattttgggacggagggagtat 4
>RF00906;MIR1122;AC111016.2/25572-25452 39947:Oryza sativa Japonica
Group
Length = 121
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 279 aggtacttataatttgggacggagggagtat 309
|||| |||||| |||||||||||||||||||
Sbjct: 88 aggttcttatattttgggacggagggagtat 118
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 283 acttataatttgggacggagggagtat 309
||||||| |||||||||||||||||||
Sbjct: 30 acttatattttgggacggagggagtat 4
>RF00906;MIR1122;AC226266.1/92361-92224 63629:Oryza minuta
Length = 138
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 279 aggtacttataatttgggacggagggagtat 309
|||| |||||| |||||||||||||||||||
Sbjct: 105 aggttcttatattttgggacggagggagtat 135
>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
Length = 145
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 284 cttataatttgggacggagggagtatg 310
|||||| ||||||||||||||||||||
Sbjct: 29 cttatattttgggacggagggagtatg 3
>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 284 cttataatttgggacggagggagtatg 310
|||||| ||||||||||||||||||||
Sbjct: 29 cttatattttgggacggagggagtatg 3
>RF00906;MIR1122;AACV01003040.1/15315-15426 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 282 tacttataatttgggacggagggagta 308
|||||||| ||||||||||||||||||
Sbjct: 82 tacttatattttgggacggagggagta 108
>RF00906;MIR1122;AP008208.1/1673372-1673471 39947:Oryza sativa
Japonica Group
Length = 100
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 282 tacttataatttgggacggagggagta 308
|||||||| ||||||||||||||||||
Sbjct: 70 tacttatattttgggacggagggagta 96
>RF00906;MIR1122;AAAA02018654.1/14883-14772 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 282 tacttataatttgggacggagggagta 308
|||||||| ||||||||||||||||||
Sbjct: 31 tacttatattttgggacggagggagta 5
