miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
          Length = 97

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 77/91 (84%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                      
Query: 10 accactatcagatgaagctgccagcgtgatctcaacttttct---ggtctcttaaaggaa 66
          ||||||| ||| ||||||||||||| |||||| |||||||||   | ||  |   |||||
Sbjct: 2  accactagcagttgaagctgccagcatgatctaaacttttctattgctccgtacgaggaa 61

                                         
Query: 67 agatcagatcatgtggcagcttcacctgttg 97
          |||||||||||||||||||| ||||||||||
Sbjct: 62 agatcagatcatgtggcagcatcacctgttg 92




>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
          Length = 94

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 61  aaggaaagatcagatcatgtggcagcttcacctgttgctggg 102
           |||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 53  aaggaaagatcagatcatgtggtagcctcacctgttgatggg 94




>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
          Length = 92

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 63 ggaaagatcagatcatgtggcagcttcacct 93
          ||||||||||||||||||||||| |||||||
Sbjct: 53 ggaaagatcagatcatgtggcagtttcacct 83



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 9  caccactatcagatgaagctgccagcgtgatctcaactt 47
          |||||||| ||| ||||||||||||| |||||| |||||
Sbjct: 1  caccactaccagttgaagctgccagcatgatcttaactt 39




>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
          Length = 93

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 9  caccactatcagatgaagctgccagcgtgatctcaactt 47
          |||||||||||| ||||||||||||| |||||| |||||
Sbjct: 1  caccactatcagttgaagctgccagcatgatctaaactt 39



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 67 agatcagatcatgtggcagcttcacctgttg 97
          ||||||||||||||||||| |||||||||||
Sbjct: 58 agatcagatcatgtggcagtttcacctgttg 88




>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
          lycopersicum
          Length = 104

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 62 aggaaagatcagatcatgtggcagcttcacctgt 95
          ||||||||||||||||||||||||| | ||||||
Sbjct: 64 aggaaagatcagatcatgtggcagccttacctgt 97




>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
          (castor bean)
          Length = 93

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 9  caccactatcagatgaagctgccagcgtgatct 41
          |||||||||||| ||||||||||||| ||||||
Sbjct: 1  caccactatcagttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
          (castor bean)
          Length = 100

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 61 aaggaaagatcagatcatgtggcagcttcacctgttg 97
          ||||| |||| ||||||||||| ||||||||||||||
Sbjct: 59 aaggatagattagatcatgtggtagcttcacctgttg 95




>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 62 aggaaagatcagatcatgtggcagcttcacctgttg 97
          ||||||||  |||||||||||||| |||||||||||
Sbjct: 62 aggaaagactagatcatgtggcagtttcacctgttg 97




>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
          trichocarpa
          Length = 94

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 71 cagatcatgtggcagcttcacctgttg 97
          ||||||||||||||| |||||||||||
Sbjct: 63 cagatcatgtggcagtttcacctgttg 89




>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
           (sea-island cotton)
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 73  gatcatgtggcagcttcacctgttgctggg 102
           |||||||||| |||||||||||||| ||||
Sbjct: 64  gatcatgtggtagcttcacctgttgttggg 93




>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
          (papaya)
          Length = 96

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 atcagatgaagctgccagcgtgatct 41
          ||||||||||||||||||| ||||||
Sbjct: 8  atcagatgaagctgccagcatgatct 33




>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
          (castor bean)
          Length = 89

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 72 agatcatgtggcagcttcacctgttg 97
          |||||||||||||| |||||||||||
Sbjct: 59 agatcatgtggcagtttcacctgttg 84