miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 121 bits (61), Expect = 2e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 14 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgcgcggaaatgcttc 73
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgtgcagaaatgcttc 60
Query: 74 tgctacatt 82
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 14 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgcgcggaaatgcttc 73
||||||||||||||||||||||||||||| |||| || ||||| |||||| ||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggatacagtgtgcggaagtgcttc 60
Query: 74 tgctacatt 82
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 60.0 bits (30), Expect = 5e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 14 aatctagtggaaacacttctgcacaaactcgatt-ttgatgccagtgcgcggaaatgctt 72
||||||||||||||| ||| ||||| |||||||| | | || ||||| |||||| |||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 73 ctgctacatt 82
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 60.0 bits (30), Expect = 5e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 14 aatctagtggaaacacttctgcacaaactcga-ttttgatgccagtgcgcggaaatgctt 72
|||||||||||| |||||||||||||||| || | ||| ||||| ||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 73 ctgctacatt 82
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 tggaaacacttctgcacaaactcgatt 47
|||||||| ||||||||||||||||||
Sbjct: 8 tggaaacatttctgcacaaactcgatt 34
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 48 ttgatgccagtgcgcggaaatgcttctgctacatt 82
|||| ||||||| | ||||||||||||||||||||
Sbjct: 38 ttgaagccagtgtgtggaaatgcttctgctacatt 72
