miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 13 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 73 taaacagctactgc 86
||||||||||||||
Sbjct: 61 taaacagctactgc 74
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 15 gagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacacta 74
||||| ||||||||||||||||||||||| ||||| | ||||||||||| |||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 62
Query: 75 aacagctactgc 86
|| |||||||||
Sbjct: 63 aatagctactgc 74
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 13 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 72
||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 73 taaacagctac 83
|||| ||||||
Sbjct: 61 taaatagctac 71
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 cagagctctggagtgtgacaatggtgtttgt 43
||||||| |||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgt 31
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 21 tggagtgtgacaatggtgtttgt-gtccaaaacatcaaacgccatcatcacactaaa 76
||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtaatcactgacatcaaacgccattatcacactaaa 65
