miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00749;mir-208;ABRQ01113272.1/13457-13378 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 115 bits (58), Expect = 8e-26
Identities = 64/66 (96%)
Strand = Plus / Minus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 79 ctctgaccaacaagctttttgctcgtcttatacgtgagcgtcaggtataacccgggctaa 20
Query: 61 aagctc 66
||||||
Sbjct: 19 aagctc 14
>RF00749;mir-208;AAPN01031605.1/4571-4492 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
|||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||
Sbjct: 79 ctctgaccaacaagctttttgctcgtcttatacgggaatgtcaggtataatctgggccaa 20
Query: 61 aagct 65
|||||
Sbjct: 19 aagct 15
>RF00749;mir-208;AAFR03022200.1/17966-18045 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 5 gaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaagc 64
||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 75 gaccaacgagctttttgctcgtcttatacacatgcatcaggtataacccggaccaaaagc 16
Query: 65 tcacccgtca 74
||||| ||||
Sbjct: 15 tcacctgtca 6
>RF00749;mir-208;AAWZ01038372.1/11370-11288 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 6 accaacaagctttttgctcgtcttatac 33
||||||||||||||||||||||||||||
Sbjct: 77 accaacaagctttttgctcgtcttatac 50
