miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00697;mir-186;AAGU02261059.1/4229-4143 9785:Loxodonta africana
(African savanna elephant)
Length = 87
Score = 153 bits (77), Expect = 5e-37
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 9 gcttacaactttccaaagaattctccttttgggctttctcattttattttaagcccaaag 68
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3 gcttataactttccaaagaattctccttttgggctttctgattttattttaagcccaaag 62
Query: 69 gtgaattttttgggaagtttgagct 93
|||||||||||||||||||||||||
Sbjct: 63 gtgaattttttgggaagtttgagct 87
>RF00697;mir-186;ABRQ01113918.1/782-866 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 153 bits (77), Expect = 5e-37
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 8 tgcttacaactttccaaagaattctccttttgggctttctcattttattttaagcccaaa 67
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tgcttataactttccaaagaattctccttttgggctttctgattttattttaagcccaaa 60
Query: 68 ggtgaattttttgggaagtttgagc 92
|||||||||||||||||||||||||
Sbjct: 61 ggtgaattttttgggaagtttgagc 85
>RF00697;mir-186;ABRO01098600.1/541-624 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 113 bits (57), Expect = 4e-25
Identities = 80/87 (91%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 7 ttgcttacaactttccaaagaattctccttttgggctttctcattttattttaagcccaa 66
||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 1 ttgcttataactttccaaagaattctccttttgggctttctgctt---tattaagcccaa 57
Query: 67 aggtgaattttttgggaagtttgagct 93
|||||||||||||||||||||||||||
Sbjct: 58 aggtgaattttttgggaagtttgagct 84
>RF00697;mir-186;AAFR03042129.1/13240-13326 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 95.6 bits (48), Expect = 1e-19
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 7 ttgcttacaactttccaaagaattctccttttgggctttctcatt-ttattttaagccca 65
||||| ||||| ||||||||||||||||||||||||||| | ||| ||| ||| ||||||
Sbjct: 1 ttgctcacaaccttccaaagaattctccttttgggcttt-tgattcttaatttcagccca 59
Query: 66 aaggtgaattttttgggaagtttgagct 93
|||||||||||||||||| |||||||||
Sbjct: 60 aaggtgaattttttgggatgtttgagct 87
>RF00697;mir-186;AAPN01067101.1/12973-13059 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 15 aactttccaaagaattctccttttgggctttctcattttattttaagcccaaaggtgaat 74
||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 9 aactttccaaagaattctccttttgggctttctatgcttggtcacagcccaaaggtgaat 68
Query: 75 tttttgggaagtttgagct 93
|||||||||||||||||||
Sbjct: 69 tttttgggaagtttgagct 87
>RF00697;mir-186;AAPN01201756.1/3297-3387 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 taagcccaaaggtgaattttttgggaagtttgagc 92
||||||||||||||||||| |||| ||||||||||
Sbjct: 57 taagcccaaaggtgaatttgttggaaagtttgagc 91
>RF00697;mir-186;AAFR03030515.1/20829-20921 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 aaaggtgaattttttgggaagtttga 90
||||||||||||||| ||||||||||
Sbjct: 66 aaaggtgaatttttttggaagtttga 91
